setFeatureSetCommands {iSEEu} | R Documentation

## Global feature set commands

### Description

Set the commands to define the global collection of feature sets. This is deprecated in favor of `registerFeatureSetCommands`.

### Usage

    setFeatureSetCommands(value)

### Arguments

`value` | A list of two character vectors named `"collections"` and `"sets"`. Both vectors should be of the same length and have the same names. Vectors should contain R commands to create collections and retrieve sets; see `?FeatureSetTable` and the output of `createGeneSetCommands` for details.

### Value

`setFeatureSetCommands` will set the current global feature set commands and return `NULL` invisibly.

### Author(s)

Aaron Lun

### See Also

`createGeneSetCommands`, for one method of generating `value`.

### Examples

    old <- getFeatureSetCommands()

    new.cmds <- createGeneSetCommands(organism="org.Mm.eg.db",
        identifier="SYMBOL")
    setFeatureSetCommands(new.cmds)

    getFeatureSetCommands()

    setFeatureSetCommands(old)

[Package iSEEu version 1.4.0 Index]