# Generated by roxygen2: do not edit by hand

export(ct.CAT)
export(ct.DirectionalTests)
export(ct.GCbias)
export(ct.PRC)
export(ct.PantherPathwayEnrichment)
export(ct.ROC)
export(ct.RRAaPvals)
export(ct.RRAalpha)
export(ct.RRAalphaBatch)
export(ct.alignmentChart)
export(ct.alphaBeta)
export(ct.applyAlpha)
export(ct.buildSE)
export(ct.ecdf)
export(ct.filterReads)
export(ct.gRNARankByReplicate)
export(ct.generateResults)
export(ct.guideCDF)
export(ct.inputCheck)
export(ct.makeContrastReport)
export(ct.makeQCReport)
export(ct.makeReport)
export(ct.makeRhoNull)
export(ct.normalizeBySlope)
export(ct.normalizeFQ)
export(ct.normalizeFactoredQuantiles)
export(ct.normalizeGuides)
export(ct.normalizeMedians)
export(ct.normalizeNTC)
export(ct.normalizeSpline)
export(ct.prepareAnnotation)
export(ct.preprocessFit)
export(ct.rawCountDensities)
export(ct.resultCheck)
export(ct.signalSummary)
export(ct.stackGuides)
export(ct.targetSetEnrichment)
export(ct.topTargets)
export(ct.viewControls)
export(ct.viewGuides)
import(Biobase)
import(PANTHER.db)
import(RobustRankAggreg)
import(ggplot2)
import(limma)
import(parallel)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,rgb)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,hist)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,segments)
importFrom(rmarkdown,draft)
importFrom(rmarkdown,render)
importFrom(stats,density)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,pbeta)
importFrom(stats,phyper)
importFrom(stats,predict)
importFrom(stats,pt)
importFrom(stats,smooth.spline)
importFrom(stats,spline)
importFrom(utils,capture.output)
importFrom(utils,getFromNamespace)
