ct.GREATdb {gCrisprTools} | R Documentation

## Update a gene-centric msdb object for GREAT-style enrichment analysis using a specified CRISPR annotation.

### Description

Update a gene-centric msdb object for GREAT-style enrichment analysis using a specified CRISPR annotation.

### Usage

    ct.GREATdb(
      annotation,
      gsdb = getMSigGeneSetDb(c("h", "c2"), "human"),
      minsize = 10
    )

### Arguments

`annotation` | an annotation object returned by `ct.prepareAnnotation()`.
`gsdb` | A gene-centric `GeneSetDb` object to conform to the relevant peakwise dataset.
`minsize` | Minimum number of targets required to consider a geneset valid for analysis.

### Value

A new `GeneSetDb` object with the features annotated genewise to pathways.

[Package gCrisprTools version 1.20.0 Index]