tidyFlow {flowTime} | R Documentation

## Generate a tidy dataset from time-course flow cytometry data

### Description

Generates a tibble containing all parameters and phenoData from a flowSet which can be used to visualize and analyze timecourse flow cytometry data.

### Usage

    tidyFlow(flowset, gated = FALSE, ploidy = NA, only = NA)

### Arguments

`flowset` | your flowSet to be analyzed
`gated` | `boolean` is the data already gated?
`ploidy` | `character` gate to subset your flowset based on the ploidy of you strains
`only` | `character` which population of events to analyze, 'yeast', singlets', or 'doublets'?

### Value

a data frame containing all of the selected subset of events from the original flowSet for all parameters including experiment time, etime, the time after the initial reading at which each event was collected.

### Examples

    plate1<-read.flowSet(path=system.file("extdata", "tc_example",
    package = "flowTime"), alter.names = TRUE)
    annotation <- read.csv(system.file("extdata", "tc_example.csv",
    package = "flowTime"))
    plate1 <- annotateFlowSet(plate1, annotation)
    tidy_dat <- tidyFlow(plate1, gated = TRUE)
    head(tidy_dat)

[Package flowTime version 1.16.1 Index]