split,flowClust-method {flowClust} | R Documentation

## Splitting Data Based on Clustering Results

### Description

This method splits data according to results of the clustering (filtering) operation. Outliers identified will be removed by default.

### Usage

    split(x, f, drop = FALSE, ...)

    ## S4 method for signature 'data.frame,flowClust'
    split(x, f, drop = FALSE,
      population = NULL, split = NULL, rm.outliers = TRUE, ...)

    ## S4 method for signature 'matrix,flowClust'
    split(x, f, drop = FALSE,
      population = NULL, split = NULL, rm.outliers = TRUE, ...)

    ## S4 method for signature 'vector,flowClust'
    split(x, f, drop = FALSE,
      population = NULL, split = NULL, rm.outliers = TRUE, ...)

    ## S4 method for signature 'flowFrame,flowClust'
    split(x, f, drop = FALSE,
      population = NULL, split = NULL, rm.outliers = TRUE, ...)

    ## S4 method for signature 'flowFrame,tmixFilterResult'
    split(x, f, drop = FALSE,
      population = NULL, split = NULL, rm.outliers = TRUE, ...)

    ## S4 method for signature 'flowFrame,flowClustList'
    split(x, f, drop = FALSE,
      population = NULL, split = NULL, rm.outliers = TRUE, ...)

    ## S4 method for signature 'data.frame,flowClustList'
    split(x, f, drop = FALSE,
      population = NULL, split = NULL, rm.outliers = TRUE, ...)

    ## S4 method for signature 'matrix,flowClustList'
    split(x, f, drop = FALSE,
      population = NULL, split = NULL, rm.outliers = TRUE, ...)

    ## S4 method for signature 'vector,flowClustList'
    split(x, f, drop = FALSE,
      population = NULL, split = NULL, rm.outliers = TRUE, ...)

    ## S4 method for signature 'flowFrame,tmixFilterResultList'
    split(x, f, drop = FALSE,
      population = NULL, split = NULL, rm.outliers = TRUE, ...)

### Arguments

`x` | A numeric vector, matrix, data frame of observations, or object of class `flowFrame`. This is the object on which `flowClust` or `filter` was performed.
`f` | Object returned from `flowClust` or `filter`.
`drop` | A logical value indicating whether to coerce a column matrix into a vector, if applicable. Default is `FALSE`, meaning that a single-column matrix will be retained.
`...` | Further arguments to be passed to or from other methods.
`population` | An optional argument which specifies how to split the data. If specified, it takes a list object with named or unnamed elements each of which is a numeric vector specifying which clusters are included. If this argument is left unspecified, the data object will be split into `K` subsets each of which is formed by one out of the `K` clusters used to model the data. See examples for more details.
`split` | This argument is deprecated. Should use `population` instead.
`rm.outliers` | A logical value indicating whether outliers are removed or not.

### Value

A list object with elements each of which is a subset of `x` and also retains the same class as `x`. If the `split` argument is specified with a list of named elements, those names will be used to name the corresponding elements in the resultant list object.

### Usage

split(x, f, drop=FALSE, population=NULL, split=NULL, rm.outliers=TRUE, ...)

### Author(s)

Raphael Gottardo <raph@stat.ubc.ca>, Kenneth Lo <c.lo@stat.ubc.ca>

### References

Lo, K., Brinkman, R. R. and Gottardo, R. (2008) Automated Gating of Flow Cytometry Data via Robust Model-based Clustering. Cytometry A 73, 321-332.

### See Also

`Subset`, `flowClust`, `filter`

[Package flowClust version 3.30.0 Index]