flowClust-package {flowClust} | R Documentation

## Clustering for Flow Cytometry

### Description

Robust model-based clustering using a t mixture model with Box-Cox transformation.

### Details

Package: | flowClust
Type: | Package
Version: | 2.0.0
Depends: | R(>= 2.5.0), methods, mnormt, mclust, ellipse, Biobase, flowCore
Collate: | SetClasses.R SetMethods.R plot.R flowClust.R SimulateMixture.R
biocViews: | Clustering, Statistics, Visualization
License: | Artistic-2.0
Built: | R 2.6.1; universal-apple-darwin8.10.1; 2008-03-26 20:54:42; unix

### Index

list(list("box"))

  Box-Cox Transformation

list(list("density,flowClust-method"))

  Grid of Density Values for the Fitted t Mixture Model with Box-Cox Transformation

list(list("dmvt"))

  Density of the Multivariate t Distribution with Box-Cox Tranformation

list(list("dmvtmix"))

  Density of the Multivariate t Mixture Distribution with Box-Cox Tranformation

list(list("flowClust"))

  Robust Model-based Clustering for Flow Cytometry

list(list("hist.flowClust"))

  1-D Density Plot (Histogram) of Clustering Results

list(list("Map,flowClust-method"))

  Cluster Assignment Based on Clustering Results

list(list("miscellaneous"))

  Various Functions for Retrieving Information from Clustering Results

list(list("plot,flowClust-method"))

  Scatterplot of Clustering Results

list(list("plot,flowDens-method"))

  Contour or Image Plot of Clustering Results

list(list("plot,flowFrame,tmixFilterResult-method"))

  Scatterplot / 1-D Density Plot of Filtering (Clustering) Results

list(list("rbox"))

  Reverse Box-Cox Transformation

list(list("ruleOutliers,flowClust-method"))

  Showing or Modifying the Rule used to Identify Outliers

list(list("show,flowClust-method"))

  Show Method for `flowClust` / `tmixFilterResult` Object

list(list("show,tmixFilter-method"))

  Show Method for `tmixFilter` Object

list(list("SimulateMixture"))

  Random Generation from a t Mixture Model with Box-Cox Transformation

list(list("split,flowClust-method"))

  Splitting Data Based on Clustering Results

list(list("Subset,flowClust-method"))

  Subsetting Data Based on Clustering Results

list(list("summary,flowClust-method"))

  Summary Method for `flowClust` Object

list(list("tmixFilter"))

  Creating Filters and Filtering Flow Cytometry Data

### Note

Further information is available in the vignette.

### Author(s)

Raphael Gottardo <raph@stat.ubc.ca>, Kenneth Lo <c.lo@stat.ubc.ca>

Maintainer: Raphael Gottardo <raph@stat.ubc.ca>

### References

Lo, K., Brinkman, R. R. and Gottardo, R. (2008) Automated Gating of Flow Cytometry Data via Robust Model-based Clustering. Cytometry A 73, 321-332.

[Package flowClust version 3.30.0 Index]