plotMASwish {fishpond} | R Documentation

## MA plot

### Description

MA plot

### Usage

    plotMASwish(y, alpha = 0.05, sigcolor = "blue", ...)

### Arguments

`y` | a SummarizedExperiment (see `swish`)
`alpha` | the FDR threshold for coloring points
`sigcolor` | the color for the significant points
`...` | passed to plot

### Value

nothing, a plot is displayed

### Examples

    y <- makeSimSwishData()
    y <- scaleInfReps(y)
    y <- labelKeep(y)
    y <- swish(y, x="condition")
    plotMASwish(y)

[Package fishpond version 1.8.0 Index]