maxStepProb {epigraHMM} | R Documentation

## M-step (maximization w.r.t. initial and transition probabilities)

### Description

M-step (maximization w.r.t. initial and transition probabilities)

### Usage

    maxStepProb(hdf5)

### Arguments

`hdf5` | path to where the hdf5 is saved

### Examples

    #Creating dummy object
    countData <- rbind(matrix(rnbinom(1e3,mu = 2,size = 10),ncol = 1),
                      matrix(rnbinom(2e3,mu = 7.5,size = 5),ncol = 1),
                      matrix(rnbinom(1e3,mu = 2,size = 10),ncol = 1))

    colData <- data.frame(condition = 'A', replicate = 1)
    object <- epigraHMMDataSetFromMatrix(countData,colData)

    #Initializing
    object <- initializer(object,controlEM())

    #Running epigraHMM
    object <- epigraHMM(object,controlEM(),type = 'consensus',dist = 'nb')

    #Example
    maxStepProb(hdf5 = S4Vectors::metadata(object)$output)

[Package epigraHMM version 1.0.8 Index]