addOffsets {epigraHMM} | R Documentation

## Add offsets to epigraHMMDataSet

### Description

This function adds model offsets to epigraHMMDataSet

### Usage

    addOffsets(object, offsets)

### Arguments

`object` | an epigraHMMDataSet
`offsets` | a matrix with model offsets

### Details

To be added

### Value

An epigraHMMDataSet with an 'offsets' assay filled in.

### References

https://github.com/plbaldoni/epigraHMM

### Examples

    # Creating dummy object
    countData <- list('counts' = matrix(rpois(4e5,10),ncol = 4),
    'controls' = matrix(rpois(4e5,5),ncol = 4))
    colData <- data.frame(condition = c('A','A','B','B'), replicate = c(1,2,1,2))
    object <- epigraHMMDataSetFromMatrix(countData,colData)

    # Adding pre-computed offsets
    object <- addOffsets(object = object,
                         offsets = matrix(rnorm(4e5),ncol = 4))

[Package epigraHMM version 1.0.8 Index]