Deprecated {ensembldb} | R Documentation

## Deprecated functionality

### Description

All functions, methods and classes listed on this page are deprecated and might be removed in future releases.

`GeneidFilter` creates a `GeneIdFilter`. Use `GeneIdFilter` from the `AnnotationFilter` package instead.

`GenebiotypeFilter` creates a `GeneBiotypeFilter`. Use `GeneBiotypeFilter` from the `AnnotationFilter` package instead.

`EntrezidFilter` creates a `EntrezFilter`. Use `EntrezFilter` from the `AnnotationFilter` package instead.

`TxidFilter` creates a `TxIdFilter`. Use `TxIdFilter` from the `AnnotationFilter` package instead.

`TxbiotypeFilter` creates a `TxBiotypeFilter`. Use `TxBiotypeFilter` from the `AnnotationFilter` package instead.

`ExonidFilter` creates a `ExonIdFilter`. Use `ExonIdFilter` from the `AnnotationFilter` package instead.

`ExonrankFilter` creates a `ExonRankFilter`. Use `ExonRankFilter` from the `AnnotationFilter` package instead.

`SeqNameFilter` creates a `SeqNameFilter`. Use `SeqNameFilter` from the `AnnotationFilter` package instead.

`SeqstrandFilter` creates a `SeqStrandFilter`. Use `SeqStrandFilter` from the `AnnotationFilter` instead.

`SeqstartFilter` creates a `GeneStartFilter`, `TxStartFilter` or `ExonStartFilter` depending on the value of the parameter `feature`. Use `GeneStartFilter`, `TxStartFilter` and `ExonStartFilter` instead.

`SeqendFilter` creates a `GeneEndFilter`, `TxEndFilter` or `ExonEndFilter` depending on the value of the parameter `feature`. Use `GeneEndFilter`, `TxEndFilter` and `ExonEndFilter` instead.

### Usage

    GeneidFilter(value, condition = "==")

    GenebiotypeFilter(value, condition = "==")

    EntrezidFilter(value, condition = "==")

    TxidFilter(value, condition = "==")

    TxbiotypeFilter(value, condition = "==")

    ExonidFilter(value, condition = "==")

    ExonrankFilter(value, condition = "==")

    SeqnameFilter(value, condition = "==")

    SeqstrandFilter(value, condition = "==")

    SeqstartFilter(value, condition = ">", feature = "gene")

    SeqendFilter(value, condition = "<", feature = "gene")

### Arguments

`value` | The value for the filter.
`condition` | The condition for the filter.
`feature` | For `SeqstartFilter` and `SeqendFilter`: on what type of feature should the filter be applied? Supported are `"gene"`, `"tx"` and `"exon"`.

[Package ensembldb version 2.16.4 Index]