DpeakMotif-class {dpeak} | R Documentation

## Class "DpeakMotif"

### Description

This class represents dPeak data.

### Objects from the Class

Objects can be created by calls of the form `new("DpeakMotif", ...)`.

### Slots

`motif`:

  Object of class `"character"`, representing a vector of motifs.

`locMotif`:

  Object of class `"list"`, representing list of locations of motifs in candidate regions.

`peakChr`:

  Object of class `"character"`, representing a vector of chromosome of each peak.

`peakStart`:

  Object of class `"numeric"`, representing a vector of start position of each peak.

`peakEnd`:

  Object of class `"numeric"`, representing a vector of end position of each peak.

### Methods

dpeakFit

  `signature(object = "DpeakMotif")`: fit the deconvolution model.

show

  `signature(object = "DpeakMotif")`: provide brief summary of the object.

### Author(s)

Dongjun Chung

### See Also

`dpeakMotif`, `dpeakFit`.

### Examples

    ## Not run:
    library(BSgenome.Ecoli.NCBI.20080805)
    resultMotif <- dpeakMotif( peakfile="vignettes/examplePeak.txt", refGenome=Ecoli )

    ## End(Not run)

[Package dpeak version 1.4.0 Index]