dittoSeq {dittoSeq} | R Documentation

## dittoSeq

### Description

This package was built to make the visualization of single-cell and bulk RNA-sequencing data pipeline-agnostic and accessible for both experienced and novice coders, and for color vision impaired individuals.

### Details

Includes many plotting functions (`dittoPlot`, `dittoDimPlot`, `dittoBarPlot`, `dittoHeatmap`, ...), helper funtions (`meta`, `gene`, `isMeta`, `getMetas`, ...), and color adjustment functions (`Simulate`, `Darken`, `Lighten`), to aid in making sense of RNA sequencing data. All included plotting functions produce a ggplot object (or `pheatmap` / `Heatmap` for dittoHeatmap) by default and can spit out a full plot with just a few arguments. Many additional arguments are available for customization to generate complex, publication-ready figures.

Default `dittoColors` are color blindness friendly and adapted from Wong B, "Points of view: Color blindness." Nature Methods, 2011.

To report bugs, suggest new features, or ask for help, the best method is to create an issue on the github, here, or the bioconductor support site (be sure to tag 'dittoSeq' so that I get a notification!), here

### Author(s)

Daniel Bunis

[Package dittoSeq version 1.4.4 Index]