getMouseTSS {diffloop} | R Documentation

## Get Mouse Transcription Start Sites

### Description

`getMouseTSS` returns a `GRanges` object of all transcription start sites for humans. Regions from mm9 for protein coding regions.

### Usage

    getMouseTSS(chr)

    ## S4 method for signature 'missing'
    getMouseTSS(chr)

    ## S4 method for signature 'character'
    getMouseTSS(chr)

### Arguments

`chr` | Specifies what chromosomes are desired for the TSS#

### Details

This function returns a `GRanges` object with the coordinates and gene TSS. The start and end of the IRanges slot will be the same number, so consider using the `padGRanges` function after calling this function.

### Value

A GRanges object

### Examples

    # Grab all transition start sites genome-wide
    mouse.TSS <- getMouseTSS()

[Package diffloop version 1.20.0 Index]