plotTopGenes {diffUTR} | R Documentation

## plotTopGenes

### Description

plotTopGenes

### Usage

    plotTopGenes(se, n = 10, FDR = 0.05, diffUTR = FALSE, alpha = 1, ...)

### Arguments

`se` | A bin-wise SummarizedExperiment as produced by `countFeatures` and including bin-level tests (i.e. having been passed through one of the DEU wrappers such as `diffSpliceWrapper` or `DEXSeqWrapper`)
`n` | The maximum number of genes for which to plot labels
`FDR` | The FDR threshold above which to plot labels
`diffUTR` | Logical; if FALSE, uses absolute coefficients (appropriate for normal differential exon usage); if TRUE, uses non-absolute (ie changes should be in the same direction across significant bins) and width-weighted scores (i.e. larger bins have more weight) – this is relevant only when testing UTR usage.
`alpha` | Points transparency
`...` | Passed to geom_label_repel; this can for instance be used to increase 'max.overlaps' when not all desired gene labels are displayed)

### Value

A ggplot

### Examples

    data(example_bin_se)
    se <- diffSpliceWrapper(example_bin_se, ~condition)
    plotTopGenes(se)

[Package diffUTR version 1.0.0 Index]