plotAlexandrovModel {decompTumor2Sig} | R Documentation

## plotAlexandrovModel (internal function)

### Description

'plotAlexandrovModel()' plots a single signature or the mutation frequency data for a single genome of the Alexandrov-type model.

### Usage

    plotAlexandrovModel(mutData, numBases, trDir, colors = NULL,
    strip = NULL)

### Arguments

`mutData` | (Mandatory) The signature or genome mutation frequency data to be plotted.
`numBases` | The number of bases of the sequence pattern.
`trDir` | Logical value specifying whether transcription strand information is present.
`colors` | Vector of six colors to be used for the base change data. If `NULL` (default), the colors are set to those used by the COSMIC website.
`strip` | Background color for strip labels. If `NULL` (default), "papayawhip" will be used.

### Value

Returns (or draws) a plot according to the Alexandrov model of mutational signatures.

### Author(s)

Rosario M. Piro
Politecnico di Milano
Maintainer: Rosario M. Piro
E-Mail: <rmpiro@gmail.com> or <rosariomichael.piro@polimi.it>

### References

http://rmpiro.net/decompTumor2Sig/
Krueger, Piro (2019) decompTumor2Sig: Identification of mutational signatures active in individual tumors. BMC Bioinformatics 20(Suppl 4):152.

[Package decompTumor2Sig version 2.8.0 Index]