determineTypeNumBasesAndTrDir {decompTumor2Sig} | R Documentation

## determineTypeNumBasesAndTrDir (internal function)

### Description

For a given signature or genome representation: determine the type (Shiraishi or Alexandrov), the number of bases, and whether transcription-strand information is included.

### Usage

    determineTypeNumBasesAndTrDir(mutData)

### Arguments

`mutData` | The mutation frequency data of the signature or genome.

### Value

A list object composed of: "type"=type of signature or genome; "numBases"=number of bases of the sequence patterns; and "trDir"=logical value indicating whether transcription-strand information has been considered in the mutation frequency data.

### Author(s)

Rosario M. Piro
Politecnico di Milano
Maintainer: Rosario M. Piro
E-Mail: <rmpiro@gmail.com> or <rosariomichael.piro@polimi.it>

### References

http://rmpiro.net/decompTumor2Sig/
Krueger, Piro (2019) decompTumor2Sig: Identification of mutational signatures active in individual tumors. BMC Bioinformatics 20(Suppl 4):152.

[Package decompTumor2Sig version 2.8.0 Index]