makeTaxonomyFasta_Silva {dada2} | R Documentation

## DEPRECATED in favor of 'makeTaxonomyFasta_SilvaNR“

### Description

This function creates the dada2 assignTaxonomy training fasta for the Silva .align file generated by the Mothur project.

### Usage

    makeTaxonomyFasta_Silva(fin, ftax, fout, compress = TRUE)

### Details

## Silva release v128 path <- "~/Desktop/Silva/Silva.nr_v128" dada2:::makeTaxonomyFasta_Silva(file.path(path, "silva.nr_v128.align"), file.path(path, "silva.nr_v128.tax"), "~/tax/silva_nr_v128_train_set.fa.gz")

## Silva release v132 path <- "~/Desktop/Silva/Silva.nr_v132" dada2:::makeTaxonomyFasta_Silva(file.path(path, "silva.nr_v132.align"), file.path(path, "silva.nr_v132.tax"), "~/tax/silva_nr_v132_train_set.fa.gz")

[Package dada2 version 1.20.0 Index]