ContigOrdering-class {contiBAIT} | R Documentation

## A class for storing contig ordering of a linkage group

### Description

This class is a matrix of two character vectors that represent the calculated ordering of a linkage group. The first element of this matrix is the Linkage Group sub-setted by contigs with equal strand states across all libraries in the calculated order. The second element is the names of names of each contig in the calculated order.

### Usage

    ContigOrdering(ordering = character())

### Arguments

`ordering` | a matrix of two character vectors that represent the calculated ordering of a linkage group. The first element of this matrix is the Linkage Group sub-setted by contigs with equal strand states across all libraries in the calculated order. The second element is the names of names of each contig in the calculated order.

### Value

a `ContigOrdering`

### Examples

    thisOrdering <- ContigOrdering(matrix(ncol=2, c( "LG1.11", "chr2:1000820-2001640",
    			"LG1.1", "chr2:3002461-4003281")))

[Package contiBAIT version 1.20.0 Index]