create_differential_topology {condiments} | R Documentation

## Create Example function

### Description

This creates a simulated reduced dimension dataset

### Usage

    create_differential_topology(
      n_cells = 200,
      noise = 0.15,
      shift = 10,
      unbalance_level = 0.9,
      speed = 1
    )

### Arguments

`n_cells` | The number of cells in the dataset.
`noise` | Amount of noise. Between 0 and 1.
`shift` | How much should the top lineage shift in condition B.
`unbalance_level` | How much should the bottom lineage be unbalanced toward condition A.
`speed` | How fast the cells from condition B should differentiate

### Value

A list with two components

- `sd`: An `n_cells` by `4` dataframe that contains the reduced dimensions coordinates, lineage assignment (1 or 2) and condition assignment (A or B) for each cell.

- `mst`: a data.frame that contains the skeleton of the trajectories

### Examples

    sd <- create_differential_topology()

[Package condiments version 1.0.0 Index]