importBigWig {compartmap} | R Documentation

## Import and optionally summarize a bigwig at a given resolution

### Description

Import and optionally summarize a bigwig at a given resolution

### Usage

    importBigWig(
      bw,
      bins = NULL,
      summarize = FALSE,
      genome = c("hg19", "hg38", "mm9", "mm10")
    )

### Arguments

`bw` | Path a bigwig file
`bins` | Optional set of bins as a GRanges to summarize the bigwig to
`summarize` | Whether to perform mean summarization
`genome` | Which genome is the bigwig from ("hg19", "hg38", "mm9", "mm10")

### Value

SummerizedExperiment object with rowRanges corresponding to summarized features

[Package compartmap version 1.10.0 Index]