config_ATC {cola} | R Documentation

## Adjust parameters for default ATC method

### Description

Adjust parameters for default ATC method

### Usage

    config_ATC(cor_fun = stats::cor, min_cor = 0, power = 1, k_neighbours = -1, group = NULL, cores = 1, ...)

### Arguments

`cor_fun` | A function that calculates correlations from a matrix (on matrix rows).
`min_cor` | Cutoff for the minimal absolute correlation.
`power` | Power on the correlation values.
`k_neighbours` | Number of the closest neighbours to use.
`group` | A categorical variable.
`cores` | Number of cores.
`...` | Other arguments passed to `ATC`.

### Details

This function changes the default parameters for ATC method. All the arguments in this function all pass to `ATC`.

### Examples

    # use Spearman correlation
    config_ATC(cor_fun = function(m) stats::cor(m, method = "spearman"))
    # use knn
    config_ATC(k_neighbours = 100)

[Package cola version 1.8.1 Index]