collect_classes-HierarchicalPartition-method {cola} | R Documentation

## Collect classes from HierarchicalPartition object

### Description

Collect classes from HierarchicalPartition object

### Usage

    ## S4 method for signature 'HierarchicalPartition'
    collect_classes(object, merge_node = merge_node_param(),
        show_row_names = FALSE, row_names_gp = gpar(fontsize = 8),
        anno = get_anno(object[1]), anno_col = get_anno_col(object[1]), ...)

### Arguments

`object` | A `HierarchicalPartition-class` object.
`merge_node` | Parameters to merge sub-dendrograms, see `merge_node_param`.
`show_row_names` | Whether to show the row names.
`row_names_gp` | Graphic parameters for row names.
`anno` | A data frame of annotations for the original matrix columns. By default it uses the annotations specified in `hierarchical_partition`.
`anno_col` | A list of colors (color is defined as a named vector) for the annotations. If `anno` is a data frame, `anno_col` should be a named list where names correspond to the column names in `anno`.
`...` | Other arguments.

### Details

The function plots the hierarchy of the classes.

### Value

No value is returned.

### Author(s)

Zuguang Gu <z.gu@dkfz.de>

### Examples

    data(golub_cola_rh)
    collect_classes(golub_cola_rh)
    collect_classes(golub_cola_rh, merge_node = merge_node_param(depth = 2))

[Package cola version 1.8.1 Index]