heatmap.3 {cogena} | R Documentation

## heatmap.3 An improved heatmap plotting

### Description

The code is from https://github.com/obigriffith/biostar-tutorials/tree/master/Heatmaps

### Usage

    heatmap.3(
      x,
      Rowv = TRUE,
      Colv = if (symm) "Rowv" else TRUE,
      distfun = dist,
      hclustfun = hclust,
      dendrogram = c("both", "row", "column", "none"),
      symm = FALSE,
      scale = c("none", "row", "column"),
      na.rm = TRUE,
      revC = identical(Colv, "Rowv"),
      add.expr,
      breaks,
      symbreaks = max(x < 0, na.rm = TRUE) || scale != "none",
      col = "heat.colors",
      colsep,
      rowsep,
      sepcolor = "white",
      sepwidth = c(0.05, 0.05),
      cellnote,
      notecex = 1,
      notecol = "cyan",
      na.color = par("bg"),
      trace = c("none", "column", "row", "both"),
      tracecol = "cyan",
      hline = median(breaks),
      vline = median(breaks),
      linecol = tracecol,
      margins = c(4, 2),
      ColSideColors,
      RowSideColors,
      side.height.fraction = 0.3,
      cexRow = 0.2 + 1/log10(nr),
      cexCol = 0.2 + 1/log10(nc),
      labRow = NULL,
      labCol = NULL,
      key = TRUE,
      keysize = 1.5,
      density.info = c("none", "histogram", "density"),
      denscol = tracecol,
      symkey = max(x < 0, na.rm = TRUE) || symbreaks,
      densadj = 0.25,
      main = NULL,
      xlab = NULL,
      ylab = NULL,
      lmat = NULL,
      lhei = NULL,
      lwid = NULL,
      ColSideColorsSize = 1,
      RowSideColorsSize = 1,
      KeyValueName = "Value",
      ...
    )

### Value

a heatmap figure

### Author(s)

Obi Griffith

[Package cogena version 1.26.0 Index]