summarizeWindowBps {cn.farms} | R Documentation

## Combines neighbouring locations to windows

### Description

Combines neighbouring locations to windows

### Usage

    summarizeWindowBps(phInf, fixedBps = 10000, upperLimit = 6)

### Arguments

`phInf` | The locations on the chromosomes.
`fixedBps` | Size of the window in basepairs.
`upperLimit` | Maximal number of neigbouring locations to combine.

### Value

Indices for summarization

### Author(s)

Djork-Arne Clevert okko@clevert.de and Andreas Mitterecker mitterecker@bioinf.jku.at

### Examples

    ## create toy physical data
    sizeTmp <- 30
    phInf <- data.frame(
            chrom = rep("15", sizeTmp),
            start = seq(from = 1, by = 300, length.out = sizeTmp),
            end = seq(from = 3600, by = 300, length.out = sizeTmp),
            man_fsetid = paste("SNP_A-", seq(sizeTmp)+1000, sep = ""))
    summarizeWindowBps(phInf)

[Package cn.farms version 1.40.0 Index]