cor_to_call {clustifyr} | R Documentation

## get best calls for each cluster

### Description

get best calls for each cluster

### Usage

    cor_to_call(
      cor_mat,
      metadata = NULL,
      cluster_col = "cluster",
      collapse_to_cluster = FALSE,
      threshold = 0,
      rename_prefix = NULL,
      carry_r = FALSE
    )

### Arguments

`cor_mat` | input similarity matrix
`metadata` | input metadata with tsne or umap coordinates and cluster ids
`cluster_col` | metadata column, can be cluster or cellid
`collapse_to_cluster` | if a column name is provided, takes the most frequent call of entire cluster to color in plot
`threshold` | minimum correlation coefficent cutoff for calling clusters
`rename_prefix` | prefix to add to type and r column names
`carry_r` | whether to include threshold in unassigned names

### Value

dataframe of cluster, new ident, and r info

### Examples

    res <- clustify(
        input = pbmc_matrix_small,
        metadata = pbmc_meta,
        cluster_col = "classified",
        ref_mat = cbmc_ref
    )

    cor_to_call(res)

[Package clustifyr version 1.4.0 Index]