cor_to_call_topn {clustifyr} | R Documentation

## get top calls for each cluster

### Description

get top calls for each cluster

### Usage

    cor_to_call_topn(
      cor_mat,
      metadata = NULL,
      col = "cluster",
      collapse_to_cluster = FALSE,
      threshold = 0,
      topn = 2
    )

### Arguments

`cor_mat` | input similarity matrix
`metadata` | input metadata with tsne or umap coordinates and cluster ids
`col` | metadata column, can be cluster or cellid
`collapse_to_cluster` | if a column name is provided, takes the most frequent call of entire cluster to color in plot
`threshold` | minimum correlation coefficent cutoff for calling clusters
`topn` | number of calls for each cluster

### Value

dataframe of cluster, new potential ident, and r info

### Examples

    res <- clustify(
        input = pbmc_matrix_small,
        metadata = pbmc_meta,
        ref_mat = cbmc_ref,
        query_genes = pbmc_vargenes,
        cluster_col = "classified"
    )

    cor_to_call_topn(
        cor_mat = res,
        metadata = pbmc_meta,
        col = "classified",
        collapse_to_cluster = FALSE,
        threshold = 0.5
    )

[Package clustifyr version 1.4.0 Index]