parse_loc_object {clustifyr} | R Documentation

## more flexible parsing of single cell objects

### Description

more flexible parsing of single cell objects

### Usage

    parse_loc_object(
      input,
      type = class(input),
      expr_loc = NULL,
      meta_loc = NULL,
      var_loc = NULL,
      cluster_col = NULL,
      lookuptable = NULL
    )

### Arguments

`input` | input object
`type` | look up predefined slots/loc
`expr_loc` | expression matrix location
`meta_loc` | metadata location
`var_loc` | variable genes location
`cluster_col` | column of clustering from metadata
`lookuptable` | if not supplied, will look in built-in table for object parsing

### Value

list of expression, metadata, vargenes, cluster_col info from object

### Examples

    obj <- parse_loc_object(s_small3)
    length(obj)

[Package clustifyr version 1.4.0 Index]