get_ucsc_reference {clustifyr} | R Documentation

## Build reference atlases from external UCSC cellbrowsers

### Description

Build reference atlases from external UCSC cellbrowsers

### Usage

    get_ucsc_reference(cb_url, cluster_col, ...)

### Arguments

`cb_url` | URL of cellbrowser dataset (e.g. http://cells.ucsc.edu/?ds=cortex-dev). Note that the URL must contain the ds=dataset-name suffix.
`cluster_col` | annotation field for summarizing gene expression (e.g. clustering, cell-type name, samples, etc.)
`...` | additional args passed to average_clusters

### Value

reference matrix

### Examples

    ## Not run:
    get_ucsc_reference(cb_url = "http://cells.ucsc.edu/?ds=kidney-atlas%2FFetal_Immune",
                       cluster_col = "celltype")

    ## End(Not run)

[Package clustifyr version 1.4.0 Index]