fluidigmData {clusterExperiment} | R Documentation

## Subset of fluidigm data

### Description

Subset of fluidigm data

### Format

subset of fluidigm data used in vignette package.

### Details

`fluidigmData` and `fluidigmColData` are portions of the `fluidigm` data distributed in the package `scRNAseq` package. We have subsetted to only the cells sequenced under high depth, and limited our selves to only two of the four gene estimates provided by `scRNAseq` ("tophat_counts" and "rsem_tpm").

### Author(s)

Elizabeth Purdom epurdom@stat.berkeley.edu

### See Also

`fluidigm`

### Examples

    #code used to create objects:
    ## Not run:
    library(scRNAseq)
    if(packageVersion("scRNAseq")>="1.11.0") fluidigm <- ReprocessedFluidigmData() else data(fluidigm)
    fluidSubset<- fluidigm[,colData(fluidigm)[,"Coverage_Type"]=="High"]
    fluidigmData<-assays(fluidSubset)[c("tophat_counts","rsem_tpm")]
    fluidigmColData<-as.data.frame(colData(fluidSubset))
    usethis::use_data(fluidigmData, fluidigmColData, overwrite=FALSE)

    ## End(Not run)

[Package clusterExperiment version 2.12.0 Index]