aclinicalProteomicsData-methods {clippda} | R Documentation

## S4 method for the aclinicalProteomicsData class

### Description

An S4 method for the object `aclinicalProteomicsData` class objects.

### Examples

    setClass("clinicalProteomicsData",representation(rawSELDIdata="matrix",phenotypicData="matrix",varInfo="character",
    variableClass="character",no.peaks="numeric"),
    prototype(rawSELDIdata=matrix(0),phenotypicData=matrix(0),varInfo=as.character(0),variableClass=as.character(0),no.peaks=0))

    slotNames("aclinicalProteomicsData")

    setMethod("show","aclinicalProteomicsData",
    function(object) {
    cat("clinical proteomics data")
    cat("Type			:", class(object), "\n")
    cat("raw data		:", paste(object@rawSELDIdata), "\n")
    cat("phenotypic data	:", paste(object@phenotypicData), "\n")
    cat("variable information	:", paste(object@varInfo), "\n")
    cat("variable class		:", paste(object@variableClass), "\n")
    cat("number of peaks	:", paste(object@no.peaks), "\n")
    }
    )

    slotNames( new("clinicalProteomicsData"))

    ## library(clippda)
    data(liverdata)
    data(liver_pheno)

    OBJECT=new("clinicalProteomicsData")
    OBJECT@rawSELDIdata=as.matrix(liverdata)
    OBJECT@varInfo=c("tumor" ,    "sex")
    OBJECT@phenotypicData=as.matrix(liver_pheno)
    OBJECT@variableClass=c('numeric','factor','factor')
    OBJECT@no.peaks=53

    show(OBJECT)

[Package clippda version 1.42.0 Index]