compare_connections {cicero} | R Documentation

## Compare Cicero connections to other datasets

### Description

Compare two sets of connections and return a vector of logicals for whether connections in one are present in the other.

### Usage

    compare_connections(conns1, conns2, maxgap = 0)

### Arguments

`conns1` | A data frame of Cicero connections, like those output from `assemble_connections`. The first two columns must be the coordinates of peaks that are connected.
`conns2` | A data frame of connections to be searched for overlap. The first two columns must be coordinates of genomic sites that are connected.
`maxgap` | The number of base pairs between peaks allowed to be called overlapping. See `findOverlaps-methods` in the IRanges package for further description.

### Value

A vector of logicals of whether the Cicero pair is present in the alternate dataset.

### Examples

    ## Not run:
    cons$in_dataset <- compare_connections(conns, alt_data)

    ## End(Not run)

[Package cicero version 1.10.1 Index]