df_for_coords {cicero} | R Documentation

## Construct a data frame of coordinate info from coordinate strings

### Description

Construct a data frame of coordinate info from coordinate strings

### Usage

    df_for_coords(coord_strings)

### Arguments

`coord_strings` | A list of coordinate strings (each like "chr1:500000-1000000")

### Details

Coordinate strings consist of three pieces of information: chromosome, start, and stop. These pieces of information can be separated by the characters ":", "_", or "-". Commas will be removed, not used as separators (ex: "chr18:8,575,097-8,839,855" is ok).

### Value

data.frame with three columns, chromosome, starting base pair and ending base pair

### Examples

      df_for_coords(c("chr1:2,039-30,239", "chrX:28884:101293"))

[Package cicero version 1.10.1 Index]