50abc68a9ab7b3bd6fc1c8c0caba05ce *DESCRIPTION
1b1474442473c4d14baa6acf93cfdba6 *INDEX
bc23129884718f2c54aeb6ce9e385d95 *Meta/Rd.rds
1d9062bbdd6c9198e3628bdeb88cee59 *Meta/data.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
d99afaf010e686e6b2d0f6379ae66151 *Meta/hsearch.rds
b55e21b749f9497801f76a44765c5e7e *Meta/links.rds
414713dd020da5f6efd182a135e2e242 *Meta/nsInfo.rds
422f1313ef142762279e65444d42ab31 *Meta/package.rds
0cf6f16425746b07ec88b3a40d8503cd *Meta/vignette.rds
8406fd1414247da7405904c2546ad3c6 *NAMESPACE
d6c68f1fe41ced6e98a766a3757313da *R/chipseq
5967db93566da0c08483cf8d6322727e *R/chipseq.rdb
b9e89d0742ec900dce6cb0d43a54e399 *R/chipseq.rdx
c67ac49dbe2a5c389a1b642feed5cbc9 *Scripts/AntibodyComparison.Rnw
630a273418c2f9ea72fc5134e7ec70dd *Scripts/CTCFBindingSites.R
ca9cf8135dd0e90c84a79c7d25b67f8e *Scripts/CTCF_ERV.R
aee97330bc6fc5325ce931bed2ce78db *Scripts/CopyNumber.Rnw
b9fdf9ddd9d25837d91b84181d44a947 *Scripts/Islands.Rnw
d3e0e7d6d67905e3f34b7b3115d6729a *Scripts/MyoD.R
70ed9c49dec4afdb22fde785402b70ba *Scripts/PairedEndComparison.Rnw
dcb4e37001f03145920d1c8ff3117e0f *Scripts/PeakContextHuman.Rnw
e22d7dbd060325161369d0e7e2e58809 *Scripts/PeakContextMouse.Rnw
bf012dbfcfee1aee1d476b131ff815b6 *Scripts/PeakCutoff.Rnw
027314cba8b874dc1d337a24048faf6a *Scripts/PeakModel.Rnw
10a39afb911fbcfd768ce3f473074e6e *Scripts/PeakReproducibility.Rnw
fc5f8df77609407d4dde159745ead9de *Scripts/PeaksByCopyNumber.Rnw
727166198a38cc8d25d326ca1eb40ec4 *Scripts/RateComparison.Rnw
aa70f1fa6f051112a2d02f42a95ce676 *Scripts/ReadAndSave54.R
ae7894a5b856dbaf4eb47efb18a37aaa *Scripts/ReadAndSaveCTCF.R
42e617263ffdc34e7ca72e2812520574 *Scripts/ReadAndSaveData.R
05caa000363574dcdbb4f33f43adc444 *Scripts/ReadAndSaveSimulation.R
0499bfe7ca2da5b930300dcea653fe3f *Scripts/SolexaSim.R
8418412635db910c56247de35566e5e9 *Scripts/abc.rda
b2b3308f0d60517c9e1d4d10aadc2ac9 *Scripts/antibody_comparison.R
ed4f51f8bcebaf4eeeb5c96ff4879c24 *Scripts/dePeaks.R
f7d49434a22023a99f7926fb6ee4f6e6 *Scripts/diffpeak.R
3ed9c551e8103a45b28b99eb559a484f *Scripts/diffpeaks.R
837228bc953727b032e40cbb6205a57d *Scripts/estimate_fragment_size.R
a06c7dabaad7ed64c565327650ca8cc9 *Scripts/fibroblasts.R
e72faaaedf165cab4014877a5c052884 *Scripts/getIsochores.R
3783000fdd3bf5e218849c3c4f13125f *Scripts/hmm.R
4b7c58b557ccce7b42ccc011b4d82021 *Scripts/human-islands.R
eeaf2ff4f62313033a80205dee813c86 *Scripts/isochore_comparison.R
f7328263dd15bd2151f28b1608cbbb49 *Scripts/isochores.mm9.rda
c7a667f5161cfde7f01daaa6d4caa464 *Scripts/negbinomial.R
a2ca467d2433f490d5cc6b1343690bb2 *Scripts/peakContext.R
786298cc4d4d8d7fba7ac8a3cdf3bdc5 *Scripts/peak_mle.R
e14f736999fe4d70f015fb4d4e39ba68 *Scripts/poisson.R
2d307d1468ebac6eea2f052f07bb4e30 *Scripts/simulate.R
bf32b8fbb5ae9f6aca83195bf78deae3 *Scripts/singletons.Rnw
41c6ab6fd784ed7445193929413afc97 *Scripts/solexa54.R
601e7f10d36f8c8da2d856f410aef879 *data/cstest.rda
ecf5bb4234b028fcab1fdb3c88b52ab0 *data/datalist
2427feeb636619e50d1023c80511d998 *doc/Workflow.R
219e82a7af0f2e1d04933c8b87e6166a *doc/Workflow.Rnw
7fb0f5fb2945a3b29c93307a9d10d07e *doc/Workflow.pdf
32207b13a2f38060064f4cc8b0c8c442 *doc/index.html
7d4b71aca2e2ed20799a1338b54b87bb *help/AnIndex
f2c80b39caf4907b4cc310b6bbf46865 *help/aliases.rds
2822be51e9850c618bf34ad9e43ffc4e *help/basesCovered.html
e8d7bb45060ccf835e3980a7f706a448 *help/chipseq.rdb
20a6189fcf728c41669ca9b1be61af83 *help/chipseq.rdx
02e7478f7b7fecc9f8f0f7f113a7ea71 *help/chipseqFilter.html
1f82e44123877ea6efc8fdb6c084f2e3 *help/coverageplot.html
bbb72fb43945de552bc8aeb4eafb8cf7 *help/cstest.html
2822be51e9850c618bf34ad9e43ffc4e *help/densityCorr,GenomicRanges.html
2822be51e9850c618bf34ad9e43ffc4e *help/densityCorr,list.html
2822be51e9850c618bf34ad9e43ffc4e *help/densityCorr.html
d7f5d186a71a0b4b1562230f6ae149ee *help/diffPeakSummary,RleViewsList,RleViewsList-method.html
d7f5d186a71a0b4b1562230f6ae149ee *help/diffPeakSummary.html
2822be51e9850c618bf34ad9e43ffc4e *help/estimate.mean.fraglen,AlignedRead-method.html
2822be51e9850c618bf34ad9e43ffc4e *help/estimate.mean.fraglen,GRanges-method.html
2822be51e9850c618bf34ad9e43ffc4e *help/estimate.mean.fraglen.html
a7654a2687ea837740dc767923c741bb *help/islandDepthPlot.html
c62ce901cd224684cd199aa14b2f4084 *help/laneSubsample.html
d995f79d90a7d36c933629de7f47a3ec *help/paths.rds
917185cc57a823814b41f308b11416ea *help/peakCutoff.html
a20d911322b0ab0783533c93b29d2cb3 *help/peakSummary,RleViews-method.html
a20d911322b0ab0783533c93b29d2cb3 *help/peakSummary,RleViewsList-method.html
a20d911322b0ab0783533c93b29d2cb3 *help/peakSummary-methods.html
a20d911322b0ab0783533c93b29d2cb3 *help/peakSummary.html
2822be51e9850c618bf34ad9e43ffc4e *help/sparse.density.html
b7b911ba071c4b554d529dfddb8a2c30 *help/subsetSummary.html
f2f257b0ceb454f744f47604b30e77a9 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
56ec2c4494b380561f7a4315586b713d *html/chipseqFilter.html
ab4a1560c4d2c69663636fdd41f080f5 *html/coverageplot.html
adf52304cecfa6f49c22b4d0307abe10 *html/cstest.html
ce567d635499b90761646995578e142f *html/diffPeakSummary.html
63b3a8889392ccea0b5bb65b06e6f761 *html/estimate.mean.fraglen.html
ca27dff7b6636e885b07a2a832df8dbc *html/islandDepthPlot.html
6eff3e1f378e4f019676f8664ec5713c *html/laneSubsample.html
d9d3674345e65369b03bd6c9b1d35065 *html/peakCutoff.html
e82c8aa4187a873cb81ea8e494a761c4 *html/peakSummary-methods.html
01165350b1ff49fd509fa65197dba2d0 *html/subsetSummary.html
e2122488146eed5b85e8fc4e8b890719 *libs/i386/chipseq.dll
604487b4da4c79200ac8ab99ec572ba7 *libs/x64/chipseq.dll
