featureModuleTable {celda} | R Documentation

## Output a feature module table

### Description

Creates a table that contains the list of features in each feature module.

### Usage

    featureModuleTable(
      sce,
      useAssay = "counts",
      altExpName = "featureSubset",
      displayName = NULL,
      outputFile = NULL
    )

### Arguments

`sce` | A SingleCellExperiment object returned by celda_G, or celda_CG, with the matrix located in the `useAssay` assay slot. Rows represent features and columns represent cells.
`useAssay` | A string specifying which assay slot to use. Default "counts".
`altExpName` | The name for the altExp slot to use. Default "featureSubset".
`displayName` | Character. The column name of `rowData(sce)` that specifies the display names for the features. Default `NULL`, which displays the row names.
`outputFile` | File name for feature module table. If NULL, file will not be created. Default NULL.

### Value

Matrix. Contains a list of features per each column (feature module)

### Examples

    data(sceCeldaCG)
    featureModuleTable(sceCeldaCG)

[Package celda version 1.8.1 Index]