decontXcounts {celda} | R Documentation

## Get or set decontaminated counts matrix

### Description

Gets or sets the decontaminated counts matrix from a a SingleCellExperiment object.

### Usage

    decontXcounts(object, ...)

    decontXcounts(object, ...) <- value

    ## S4 method for signature 'SingleCellExperiment'
    decontXcounts(object, ...)

    ## S4 replacement method for signature 'SingleCellExperiment'
    decontXcounts(object, ...) <- value

### Arguments

`object` | A SingleCellExperiment object.
`...` | For the generic, further arguments to pass to each method.
`value` | A matrix to save as an assay called `decontXcounts`

### Value

If getting, the assay from `object` with the name `decontXcounts` will be returned. If setting, a SingleCellExperiment object will be returned with `decontXcounts` listed in the `assay` slot.

### See Also

`assay` and `assay<-`

[Package celda version 1.8.1 Index]