recodeClusterY {celda} | R Documentation

## Recode feature module labels

### Description

Recode feature module clusters using a mapping in the `from` and `to` arguments.

### Usage

    recodeClusterY(sce, from, to, altExpName = "featureSubset")

### Arguments

`sce` | SingleCellExperiment object returned from celda_G or celda_CG. Must contain column `celda_feature_module` in `rowData(altExp(sce, altExpName))`.
`from` | Numeric vector. Unique values in the range of `seq(celdaModules(sce))` that correspond to the original module labels in `sce`.
`to` | Numeric vector. Unique values in the range of `seq(celdaModules(sce))` that correspond to the new module labels.
`altExpName` | The name for the altExp slot to use. Default "featureSubset".

### Value

@return SingleCellExperiment object with recoded feature module labels.

### Examples

    data(sceCeldaCG)
    sceReorderedY <- recodeClusterY(sceCeldaCG, c(1, 3), c(3, 1))

[Package celda version 1.8.1 Index]