Package: cbpManager
Type: Package
Title: Generate, manage, and edit data and metadata files suitable for
        the import in cBioPortal for Cancer Genomics
Version: 1.0.2
Date: 2021-03-16
Authors@R: c(
    person(given = "Arsenij", family = "Ustjanzew", email = "arsenij.ustjanzew@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-1014-4521")),
    person("Federico", "Marini", role = "aut", email = "marinif@uni-mainz.de", comment = c(ORCID = '0000-0003-3252-7758')))
Description: This R package provides an R Shiny application that enables the user to generate, 
    manage, and edit data and metadata files suitable for the import in cBioPortal for Cancer Genomics. 
    Create cancer studies and edit its metadata. Upload mutation data of a patient that will be concatenated to the data_mutation_extended.txt file of the study. 
    Create and edit clinical patient data, sample data, and timeline data. Create custom timeline tracks for patients.  
License: AGPL-3 + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.1.1
VignetteBuilder: knitr
URL: https://arsenij-ust.github.io/cbpManager/index.html
BugReports: https://github.com/arsenij-ust/cbpManager/issues
Depends: shiny, shinydashboard
Imports: utils, DT, htmltools, vroom, plyr, dplyr, magrittr, jsonlite,
        rapportools, basilisk, reticulate, shinyBS, shinycssloaders,
        rintrojs
Suggests: knitr, BiocStyle, rmarkdown, testthat (>= 3.0.0)
StagedInstall: no
Collate: 'basilisk.R' 'dynamicTable.R' 'modulesResourceButtons.R'
        'cbpManager-pkg.R' 'functions.R' 'global.R' 'cbpManager.R'
        'shinyAppServer.R' 'shinyAppUI.R' 'zzz.R'
biocViews: ImmunoOncology, DataImport, DataRepresentation, GUI,
        ThirdPartyClient, Preprocessing, Visualization
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/cbpManager
git_branch: RELEASE_3_13
git_last_commit: 9598ce4
git_last_commit_date: 2021-08-04
Date/Publication: 2021-08-05
NeedsCompilation: no
Packaged: 2021-08-05 16:52:07 UTC; biocbuild
Author: Arsenij Ustjanzew [aut, cre, cph]
    (<https://orcid.org/0000-0002-1014-4521>),
  Federico Marini [aut] (<https://orcid.org/0000-0003-3252-7758>)
Maintainer: Arsenij Ustjanzew <arsenij.ustjanzew@gmail.com>
Built: R 4.1.0; ; 2021-08-06 12:45:54 UTC; windows
