plotBioNetLines {caOmicsV} | R Documentation

## Line Plot on caOmicsV bioNetCircos Layout

### Description

Line plot on caOmicsv bioNetCircos layout. This method plots one track of line for every node. bionetCircos layout and graphic device must be initialized first.

### Usage

        plotBioNetLines(dataValues, outer, inner, maxValue=NULL, minValue=NULL,
                plotColors=rep("black", ncol(dataValues)))

### Arguments

`dataValues` | numeric matrix of plot data
`outer` | non-negative numeric, the outside boundary of plot area from node center
`inner` | non-negative numeric, the inside boundary of plot area from node center
`maxValue` | numeric, the biggest value of plot data
`minValue` | numeric, the smallest value of plot data
`plotColors` | character vector or vector of R specification, colours for each sample

### Value

None

### Author(s)

Henry Zhang

### Examples

        data(bionetPlotDemoData)
        expr <- bionetPlotDemoData$heatmapData[[1]]
        bioNet <- bc3net(expr)

        initializeBioNetCircos(bioNet, totalSamples=60)
        showBioNetNodesLayout()
        plotBioNetLines(expr, outer=13, inner=2)

[Package caOmicsV version 1.22.0 Index]