loadCTRPgeneExpression {cTRAP} | R Documentation

## Load CTRP data

### Description

If given paths direct to non-existing files, those files will be downloaded

### Usage

    loadCTRPgeneExpression(
      geneExpressionFile = "CTRP 2.1/geneExpr.txt",
      geneInfoFile = "CTRP 2.1/geneInfo.txt",
      cellLineInfoFile = "CTRP 2.1/cellLineInfo.txt"
    )

    loadCTRPdrugSensitivity(
      drugSensitivityFile = "CTRP 2.1/drugSensitivity.txt",
      experimentFile = "CTRP 2.1/experimentInfo.txt",
      compoundFile = "CTRP 2.1/compoundInfo.txt"
    )

    loadCTRPcompoundInfo(compoundFile = "CTRP 2.1/compoundInfo.txt")

    loadNCI60geneExpression(
      file = "NCI60/geneExpr.xls",
      cellLineInfoFile = "cellLineInfo.xls"
    )

    loadGDSC7file(file, filename, type, ...)

    loadGDSC7cellLineInfo(file = "GDSC_7/cellLineInfo.xlsx")

    loadGDSC7compoundInfo(file = "GDSC_7/compoundInfo.xlsx")

    loadGDSC7geneExpression(file = "GDSC_7/geneExpr.txt")

    loadGDSC7drugSensitivity(file = "GDSC_7/drugs.xlsx")

### Arguments

`geneExpressionFile` | Character: path to file with gene expression
`geneInfoFile` | Character: path to file with gene information
`cellLineInfoFile` | Character: path to file with cell line information
`drugSensitivityFile` | Character: path to file with drug sensitivity
`experimentFile` | Character: path to file with experiment information
`compoundFile` | Character: path to file with compound information
`file` | Character: file path

### Value

Data frame

[Package cTRAP version 1.10.1 Index]