launchCMapDataLoader {cTRAP} | R Documentation

## Load CMap data via a visual interface

### Description

Load CMap data via a visual interface

### Usage

    launchCMapDataLoader(
      metadata = "cmapMetadata.txt",
      zscores = "cmapZscores.gctx",
      geneInfo = "cmapGeneInfo.txt",
      compoundInfo = "cmapCompoundInfo.txt",
      cellLine = NULL,
      timepoint = NULL,
      dosage = NULL,
      perturbationType = NULL
    )

### Arguments

`metadata` | Data frame (CMap metadata) or character (respective filepath)
`zscores` | Data frame (GCTX z-scores) or character (respective filepath to load data from file)
`geneInfo` | Data frame (CMap gene info) or character (respective filepath to load data from file)
`compoundInfo` | Data frame (CMap compound info) or character (respective filepath to load data from file)
`cellLine` | Character: cell line (if `NULL`, all values are loaded)
`timepoint` | Character: timepoint (if `NULL`, all values are loaded)
`dosage` | Character: dosage (if `NULL`, all values are loaded)
`perturbationType` | Character: type of perturbation (if `NULL`, all perturbation types are loaded)

### Value

CMap data

### See Also

Other visual interface functions: `launchDiffExprLoader()`, `launchDrugSetEnrichmentAnalyser()`, `launchMetadataViewer()`, `launchResultPlotter()`

[Package cTRAP version 1.10.1 Index]