c52e2c28feea8b2cc3288b1dd34511ee *DESCRIPTION
e9f527e8b3e7674071d95537158137ae *INDEX
cb1554ea5a11c101a80adad21a488108 *LICENSE
f186ad5b23b4f2a9f12fae535c6c8a0e *Meta/Rd.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
efb2f8d27e635c16cd0d9b96f4a1394a *Meta/hsearch.rds
cbaa18ace8f57009783669eaba2675de *Meta/links.rds
7b11d9e2c36c59f08f4bf95df7e9f5c0 *Meta/nsInfo.rds
2897ab3d73407eb6662edd7d834e026f *Meta/package.rds
5956fb3cda7f45bbf765650be702f30e *Meta/vignette.rds
75db7014d0793c6c824f56dbbd446a41 *NAMESPACE
9580ba6f68606838a97e48ded311d70d *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/breakpointR
70ea9b4854a4e2f7fb0267e7983a4aef *R/breakpointR.rdb
ddec69f18c63d697c540e97958be72f6 *R/breakpointR.rdx
f6a4f94a98e7b546209056319cf37d2d *doc/breakpointR.R
2cd20b9d735055deb96d4966d203a46e *doc/breakpointR.Rnw
299a11dabcbad034a1581a07642ca3ab *doc/breakpointR.pdf
145038ebe0b682b09b8e650b5589c02f *doc/index.html
cf22531fec83d69997bd8cd890c10144 *help/AnIndex
3bc1734ffc8decb7868e0968eb3f384b *help/BreakPoint.html
97acf537742ca6a1cac5b9d5b71fa0f7 *help/GenotypeBreaks.html
fc57c38fefa67a6282a5b216d4d8c616 *help/aliases.rds
ef9f945c5bf5df21f7fb82f786c16d02 *help/breakSeekr.html
a94c5d97561a2f55b78d71f2fb6b166e *help/breakpointR-package.html
e8b22c350877c667ada23fddf28b73ff *help/breakpointR.html
0a3f0e406db676d6aea21644fdb9d294 *help/breakpointR.rdb
d1539733526618ea740e6968eafea0bc *help/breakpointR.rdx
673b745492b45f9939d9e0faa855ccfd *help/breakpointr2UCSC.html
fd467d23984ce48abf850596faa6de93 *help/collapseBins.html
72f9f76516cf4eba6384d5e3cfacfd08 *help/confidenceInterval.binomial.html
bfc29161add6a61d40f285988fe3f93d *help/confidenceInterval.html
bc7d80a4be477df3f73421bdd298e8dc *help/createCompositeFile.html
e34b58e5148f6ce2f14e19d7a5a6b294 *help/deltaWCalculator.html
18059c1cb4d5db90b68e183feec9bc3b *help/deltaWCalculatorVariousWindows.html
752696506c09cd5a8cfb715ff5f33d02 *help/exportRegions.html
f03bfae725a0db82b7f20db6ee20208d *help/genotype.binom.html
25d3964f026ddfc8e3adcbf6281e88fe *help/genotype.fisher.html
97acf537742ca6a1cac5b9d5b71fa0f7 *help/genotyping.html
30d70e0dee1ba2f6a17d41dfa54f6615 *help/hotspotter.html
82939ab13897db1029504c8acbfcbdd9 *help/insertchr.html
9dd45db8f4ac809a17a3958603e53076 *help/loadFromFiles.html
27a433bd4d51aaee863209deb63d4fc1 *help/paths.rds
293a3d0e042472fff8ed87c21d089a84 *help/plotBreakpoints.html
8fd86ac72e6c2dd2fbb7fde4ffed115d *help/plotBreakpointsPerChr.html
b597e5dbb3c8c2d0d5b4939bec597dff *help/plotHeatmap.html
4c1b6d3c4e8efd8d34ab359675c4843a *help/ranges2UCSC.html
91cc33e42e1bdaaa747b8449ed925666 *help/readBamFileAsGRanges.html
a9e65c98756168b2381a4e60f229c09b *help/readConfig.html
b4847e3b671990a09e0309042f3d4558 *help/removeDoubleSCEs.html
1d30af4e90c4dc963a150808d8ecbf32 *help/removeReadPileupSpikes.html
042b841f95a1c70c4db740433bc2300d *help/runBreakpointr.html
59e58920efa0ef084ea774c2abe37646 *help/summarizeBreaks.html
fdc3eaa014f764c9204fe8296f4a90f9 *help/synchronizeReadDir.html
43221971a8f3814de51a5659daec538b *help/transCoord.html
054bddd9eca11ba93d723de531a8ed8d *help/writeConfig.html
9f191c81d00f595aac973d4c73a846e9 *html/00Index.html
d7fbf5fd88861833723cf3998b68c9b9 *html/BreakPoint.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
84a1e45fd32632f9dd93a537589ac205 *html/breakSeekr.html
6d06eab48ffa49887b0ba56f0dbe871f *html/breakpointR-package.html
d695ff84305364ebfc33834328c6d532 *html/breakpointr.html
28a206c68cafb10fe230f0c857e6be20 *html/breakpointr2UCSC.html
1c99d6922c06f0b115c236a6918bd73b *html/collapseBins.html
f1b5af515c2137191c517c1f2fb98886 *html/confidenceInterval.binomial.html
79fbf7658c7c9c347c799c44907a7fa1 *html/confidenceInterval.html
84b387ef7360613b7725838076fc5c1f *html/createCompositeFile.html
63405b692903dd2814bd82630950e10a *html/deltaWCalculator.html
64293e900945060709e40befd0e72fb9 *html/deltaWCalculatorVariousWindows.html
9879d6c180788b654fa1b50bd888fd86 *html/exportRegions.html
0c27d439ee496bd2aacde113f4c07e28 *html/genotype.binom.html
499f7985b5e72652f6807313a0d9f0a7 *html/genotype.fisher.html
0e9308cf9e9e132a2199e540fab21ca9 *html/genotyping.html
7bc40fac37097d39e1999980cca5d12f *html/hotspotter.html
b3faf7448b8cbe949f95a320e79dd0dd *html/insertchr.html
214d9f7d4ccfa099a3ea88b2097059df *html/loadFromFiles.html
2a3d72cbb05cb96d48d0ee690f33984b *html/plotBreakpoints.html
a9ded7a934528ae9fef027efaad19971 *html/plotBreakpointsPerChr.html
a636c75e6e0741b76ee207258347ac10 *html/plotHeatmap.html
76ed72272eec8e7f78a979dc1b7cef63 *html/ranges2UCSC.html
51919b357c2996b4472c6cbeddbafe93 *html/readBamFileAsGRanges.html
03ed289ce59d09a59446a76a5badc676 *html/readConfig.html
9cf5f99efe59ee78d801e375ec19d197 *html/removeDoubleSCEs.html
1c8063cb6ff8752028771a977624d9b4 *html/removeReadPileupSpikes.html
8426d6da88eb5278a255aadf4ca995b0 *html/runBreakpointr.html
95098aa1438e78c6c32a14cccaa45ac5 *html/summarizeBreaks.html
c05e277d1f7c0341a9dbc6345596524d *html/synchronizeReadDir.html
d05f6c2754557d157bdb7ae96a1fd2dc *html/transCoord.html
54b93749fa0556457c7f46478041168e *html/writeConfig.html
