Package: branchpointer
Type: Package
Title: Prediction of intronic splicing branchpoints
Version: 1.18.0
Date: 2017-07-14
Author: Beth Signal
Maintainer: Beth Signal <b.signal@garvan.org.au>
Description: Predicts branchpoint probability for sites in intronic branchpoint windows. Queries can be supplied as intronic regions; or to evaluate the effects of mutations, SNPs.
License: BSD_3_clause + file LICENSE
Depends: caret, R(>= 3.4)
Imports: plyr, kernlab, gbm, stringr, cowplot, ggplot2, biomaRt,
        Biostrings, parallel, utils, stats,
        BSgenome.Hsapiens.UCSC.hg38, rtracklayer, GenomicRanges,
        GenomeInfoDb, IRanges, S4Vectors, data.table
Suggests: knitr, BiocStyle
RoxygenNote: 6.0.1
VignetteBuilder: knitr
biocViews: Software, GenomeAnnotation, GenomicVariation,
        MotifAnnotation
git_url: https://git.bioconductor.org/packages/branchpointer
git_branch: RELEASE_3_13
git_last_commit: 0e0e947
git_last_commit_date: 2021-05-19
Date/Publication: 2021-05-19
NeedsCompilation: no
Packaged: 2021-05-19 23:12:59 UTC; biocbuild
Built: R 4.1.0; ; 2021-05-20 07:21:02 UTC; windows
