four_panels_example_cov {brainflowprobes} | R Documentation

## Example base-pair region coverage data

### Description

A list of base-pair region coverage data.frame lists used for exemplifying the package functionality. This is the data extracted for the example region `chr20:10286777-10288069:+` by looping through the phenotype tables stored in `pd` and using the getRegionCoverage function. This can be reproduced using the brainflowprobes_cov function in this package.

### Format

A list with the base-pair coverage output from brainflowprobes_cov with the example region used throughout the package documentation ('chr20:10286777-10288069:+').

Sep

  base-pair coverage region data.frame list for pd$Sep,

Deg

  base-pair coverage region data.frame list for pd$Deg,

Cell

  base-pair coverage region data.frame list for pd$Cell,

Sort

  base-pair coverage region data.frame list for pd$Sort.

### See Also

four_panels plot_coverage

### Examples

    if (FALSE) {
        ## Takes about 10 minutes to run!
        four_panels_example_cov <- brainflowprobes_cov(
            "chr20:10286777-10288069:+"
        )
    }

[Package brainflowprobes version 1.6.0 Index]