count_outliers {blacksheepr} | R Documentation

## Count up the outlier information for each of the groups you have made. If aggregating then you will have to turn the parameter on, but you still input the outliertable. Aggregate will count the total number of outliers AND nonoutliers in its operation, so it needs the original outlier table made by the <make_outlier_table> function.

### Description

Count up the outlier information for each of the groups you have made. If aggregating then you will have to turn the parameter on, but you still input the outliertable. Aggregate will count the total number of outliers AND nonoutliers in its operation, so it needs the original outlier table made by the <make_outlier_table> function.

### Usage

    count_outliers(groupings, outliertab,
        aggregate_features = FALSE, feature_delineator = "\\.")

### Arguments

`groupings` | table generated by the comparison_groupings function
`outliertab` | outlier table generated by make_outlier_table
`aggregate_features` | DEFAULT: FALSE; Toggle the Aggregate feature, which will aggregate features in your table based on the given delineator. Aggregation will output counts for the TOTAL number of outliers and non- outliers across ALL sites you aggregate across.
`feature_delineator` | DEFAULT: <"\.">; What character delineates the separation between primary and secondary features. NOTE: to use proper R syntax with escape characters if necessary Ex) Protein1.Phosphosite1 uses "\." to aggregate on Protein1

### Value

the tabulated information of outliers per group

### Examples

    data("sample_phosphodata")
    reftable_function_out <- make_outlier_table(sample_phosphodata[1:1000,])
    outliertab <- reftable_function_out$outliertab

    data("sample_annotationdata")
    groupings <- comparison_groupings(sample_annotationdata)

    count_outliers_out <- count_outliers(groupings, outliertab,
        aggregate_features = FALSE)
    grouptablist <- count_outliers_out$grouptablist
    fractiontab <- count_outliers_out$fractiontab

[Package blacksheepr version 1.6.0 Index]