7282a6cfc7c1136fa6143fe15b9b7013 *DESCRIPTION
4a29dd5d7438ad33ad6fc67cc90eb739 *INDEX
9c0ec2ffb4e8da5b01d011428def3436 *Meta/Rd.rds
9a2ce1811d225e457dc7cd01114fe77d *Meta/data.rds
c8440c06be5e093e05779d74c0ffa6b7 *Meta/features.rds
e13c62b0fe38878fc55c2d8b1fa81b30 *Meta/hsearch.rds
99d4f53112b37386c35d72821c3e0e73 *Meta/links.rds
0b48f8000a9da39260db044070b76732 *Meta/nsInfo.rds
9d7c7db2ba2cbd06c117a1d2e77dab8b *Meta/package.rds
b447d9da6f37e3be02edb864d6f46eec *Meta/vignette.rds
6cf393909fe343ebcf7af1ca79eaa06b *NAMESPACE
f77e5430569c792149b7596240caa1e5 *NEWS.md
d6c68f1fe41ced6e98a766a3757313da *R/biscuiteer
597be083402459f61df11b1861665efb *R/biscuiteer.rdb
5cb77ac35fd799c94c95bbb0b1c775ab *R/biscuiteer.rdx
0adde9c30a80413435c5883fdbaf18ea *data/ENSR_subset.hg19.rda
b1355be5ec9d87afa92c617a211ceb9e *data/ENSR_subset.hg38.rda
d3b3899ba06144339ee83ba8fe4ba858 *data/GRCh37.chromArm.rda
ea35f87b69e6b1eee240462d3de1e647 *data/GRCh38.chromArm.rda
e9432085dba6233b4a53865985598fb2 *data/H9state23unmeth.hg19.rda
f942e9a779658c0d196a80bf2eb49a33 *data/H9state23unmeth.hg38.rda
bdbeb2f653476bd1c3812add4b1cfc0e *data/HMM_CpG_islands.hg19.rda
515534a7e5eb261dd9fd0e333d61b33c *data/HMM_CpG_islands.hg38.rda
3279b939a7b53ad38387447c4c9d2313 *data/clocks.rda
82f9894660885e9d11cba4aed146b513 *data/datalist
6869680f11325e482806c86b47151c77 *data/hg19.chromArm.rda
247bc9d7284208061b82dddc841ae191 *data/hg38.chromArm.rda
b6e4e4db1ef5838a88d1510221c32777 *data/seqinfo.hg19.rda
cd9fd1521718f84dc72b8ce64b9a5d7f *data/seqinfo.hg38.rda
d1226704e76cb1fcc92b52443320b337 *data/seqinfo.mm10.rda
e61cf45e8cf000c4535908bde3406841 *doc/biscuiteer.R
f98e9c421f04bf730047078e3e80f71f *doc/biscuiteer.Rmd
66177add2205e1c93b2c8dd5da24b6a3 *doc/biscuiteer.html
cdc7f49c14754d18b93edd50d3ed1529 *doc/biscuiteer.md
fd59ea6d8b1580f17f285940a639daa9 *doc/index.html
31048ae3d0a6b7953760336e638b86b7 *extdata/MCF7_Cunha_chr11p15.bed.gz
1971254c2e0f420e04d8119174949b1e *extdata/MCF7_Cunha_chr11p15.bed.gz.tbi
57b14e8560ff1cde06b7578b688f20af *extdata/MCF7_Cunha_chr11p15_shuffled.bed.gz
d6ff9139c2cd7728430fa6d969fe124a *extdata/MCF7_Cunha_chr11p15_shuffled.bed.gz.tbi
61309ab54074516a5b2973f632687741 *extdata/MCF7_Cunha_header_only.vcf.gz
d80cf4090040c37259bf284f3249834b *extdata/MCF7_Cunha_header_only.vcf.gz.tbi
cfb4a86e6b86ced7a5bce1e63ac54a11 *extdata/MCF7_Cunha_shuffled_header_only.vcf.gz
7b2b4a379f80df3f17e729eb04075171 *extdata/MCF7_Cunha_shuffled_header_only.vcf.gz.tbi
45755b3aa6c2f33303c0aac5abc2326c *help/AnIndex
2a10a8d6a5dbaffe6d471e67cec42d6b *help/BSseq-methods.html
bdc63c71eb1decf6bdb5ddbeac54f6aa *help/CpGindex.html
6de49fbc3909157f548d72d7e07306c8 *help/ENSR_subset.hg19.html
e2f29574ecc67966734e4141e7b64f56 *help/ENSR_subset.hg38.html
8ec1adcd5273b712175278e659e3a78b *help/GRCh37.chromArm.html
fabbe8ca35457dbcd85d0b2973e3ddac *help/GRCh38.chromArm.html
c06d6fa4ce2ef7139a340a838722b663 *help/H9state23unmeth.hg19.html
92407d268f48a74ffb939b2b6b7789b4 *help/H9state23unmeth.hg38.html
ca62ef44709a811bf5261be538b253c3 *help/HMM_CpG_islands.hg19.html
0db6ef643108469a8a2fe3a39983e7fe *help/HMM_CpG_islands.hg38.html
af9c0af2dfa4e356eafc9c3fe7349cbe *help/RRBSeq.html
0767a903bf34b94db0ddf474233d4edc *help/WGBSage.html
7305af1f09f91881b6fe56e1cd0c7d29 *help/WGBSeq.html
b8612a9ae8b7139f5f94f946bf3a40b8 *help/_PACKAGE.html
c3ee82c29a147208ddc3b5f10d9e7add *help/aliases.rds
8c73baee4347eab60962f985361f93af *help/atRegions.html
7ba305d38340643d85b113ce93094c51 *help/binCoverage.html
f761b292f46b11b8d63279b9861378ce *help/biscuitMetadata.html
2a10a8d6a5dbaffe6d471e67cec42d6b *help/biscuiteer-methods.html
b8612a9ae8b7139f5f94f946bf3a40b8 *help/biscuiteer-package.html
b8612a9ae8b7139f5f94f946bf3a40b8 *help/biscuiteer.html
85d96cf406ff827c4cfd4f15a6686308 *help/biscuiteer.rdb
536931bd9e286fd5cd53c5cb19fd0f34 *help/biscuiteer.rdx
34f5d87392627b692419f825f0ef373e *help/byChromArm.html
9e19bd36b147a21807485cbef07b912c *help/byExtremality.html
da463e6caad8e5abbdd1b236bb1b8899 *help/checkBiscuitBED.html
51b0a3928c4fda18130a04f52819caca *help/clocks.html
a96a7e7d4f669934051069a3be47b113 *help/condenseSampleNames.html
2a10a8d6a5dbaffe6d471e67cec42d6b *help/coverage.html
77ff007b6eec62aaa43c28aeb1bdcd32 *help/extremality.html
ec7e40ef4679fc745cbb247af4602f81 *help/fexpit.html
58ea2ff4876711bcb3e490553f7804d7 *help/filterLoci.html
8a31d12ce3963dcaed02537f4eb4d456 *help/fixAge.html
5f6bfb8f1f39c40749481530ced3e56e *help/fixNAs.html
2a10a8d6a5dbaffe6d471e67cec42d6b *help/fixed,BSseq-method.html
fe1b8c92a89c0f877d184993915b3108 *help/flogit.html
2a10a8d6a5dbaffe6d471e67cec42d6b *help/geno,BSseq,ANY-method.html
f761b292f46b11b8d63279b9861378ce *help/getBiscuitMetadata.html
9518fb4d7cfd8c45fa8433722cb1bcec *help/getClock.html
cb84d60d112447872d77fce7b171fd15 *help/getLogitFracMeth.html
cb84d60d112447872d77fce7b171fd15 *help/getMvals.html
3e08963c2983c6e3d55b926aa3e35db6 *help/grToSeg.html
2a10a8d6a5dbaffe6d471e67cec42d6b *help/header,BSseq-method.html
2a10a8d6a5dbaffe6d471e67cec42d6b *help/header.html
061cd01475fe02a5e964ab4252ad6a13 *help/hg19.chromArm.html
54a70dbeea60ca9ac9a59d5fa15793c9 *help/hg38.chromArm.html
2a10a8d6a5dbaffe6d471e67cec42d6b *help/info,BSseq-method.html
02e876a824ed27d2b279af82b127d4d2 *help/loadBiscuit.html
50163ae6c57886572b4d6f8a5c7fedad *help/makeBSseq.html
2a10a8d6a5dbaffe6d471e67cec42d6b *help/meta,BSseq-method.html
c97194482a6e91faf0aeda10b970b4f0 *help/paths.rds
02e876a824ed27d2b279af82b127d4d2 *help/readBiscuit.html
2a10a8d6a5dbaffe6d471e67cec42d6b *help/reference.html
2a10a8d6a5dbaffe6d471e67cec42d6b *help/samples,BSseq-method.html
acf67d479324ec6ce3f76ed2820f0e66 *help/segToGr.html
eb01012625a82fe5b7d8bc0dd859006c *help/seqinfo.hg19.html
e84ae188c1324a834920fb8b82a674af *help/seqinfo.hg38.html
5863eb83249ff9e0a7a67137bdb9e5ba *help/seqinfo.mm10.html
58630f19f400e333e7bca86d2dc442cd *help/simplifySampleNames.html
bdc6064561deac629ba1da7697f83f5c *help/summarizeBsSeqOver.html
48bcfe3a1c78ac32495a2baf76bdd9c2 *help/unionize.html
34c29e68eb7e50d0063fa8fa9976ab54 *html/00Index.html
6d1f1c5a6943d1a3601783ee443f37df *html/CpGindex.html
69f83fd4bf001c11bc6fed81583137b7 *html/ENSR_subset.hg19.html
6fe9173508a03bdf38a2dedec96fcc25 *html/ENSR_subset.hg38.html
d0f2993684bfd2e7ff5e24e87ffb389d *html/GRCh37.chromArm.html
c7bd5e4eb7daa5119958f47c76901198 *html/GRCh38.chromArm.html
45af00f4452f350020c13567da80af6e *html/H9state23unmeth.hg19.html
b19fd55a87071c61f6b9507b6de766a7 *html/H9state23unmeth.hg38.html
ecdb46b360587868a9998c27609618e3 *html/HMM_CpG_islands.hg19.html
cf0b5f4e34dfc225c49ce3a1b8f17455 *html/HMM_CpG_islands.hg38.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
fe0dd2613dd5e526deb89c8d0a1080c0 *html/RRBSeq.html
d75feac1f6689c219e5550083daf5668 *html/WGBSage.html
688ffe4b867a26ca7489815b7844ce69 *html/WGBSeq.html
9af7c8222971958900417cfa1de4ba6d *html/atRegions.html
c0b873fb657b4cbed95ac1e6979e1baa *html/binCoverage.html
cdae31967042022857d3ff810b30b1a6 *html/biscuitMetadata.html
4d951f8a63d4fdf8246f6fd494df864c *html/biscuiteer-methods.html
d3be969a571a125038ad1802ed86dbc2 *html/biscuiteer-package.html
a634395f1c6ed87c68c0885401d1d743 *html/byChromArm.html
b554f86c2107478eef5b66d8dd8217be *html/byExtremality.html
495a026544a619f83d55a32bbe24c382 *html/checkBiscuitBED.html
afdab23b71fa4b67677f3dbc908a095f *html/clocks.html
4af8e2caf1a25560bc038f9fe970226d *html/condenseSampleNames.html
f02c609a39ef9afc0af4b15e960baf2c *html/extremality.html
5e23cbee94353686fa4a5a154bc82c88 *html/fexpit.html
b6e4064757e41e0bbfce6d6719172810 *html/filterLoci.html
cd9cdba52506c02f8bf7a26989ab1977 *html/fixAge.html
71d53772494a10c2509f175acc6e8d89 *html/fixNAs.html
ae76d854009bf155149a6c1ef667c24d *html/flogit.html
d53791422bbc9fa9fddae5da7bffadc2 *html/getClock.html
91ce233bc43bb57b481e0f55f1f7b39d *html/getLogitFracMeth.html
619c65b1b73f861ff1233207834b188b *html/grToSeg.html
83677aee735e31276ab6ed9272398093 *html/hg19.chromArm.html
73050832d5261b39487aec8125340b3c *html/hg38.chromArm.html
4d147828337918ea9ff993be978b9f61 *html/makeBSseq.html
2334ffcd6cb8195154820cc528dc8f99 *html/readBiscuit.html
045478339e31e1fe9e8314b21a78a383 *html/segToGr.html
3e11f466772ed7c3cb051920b670f04e *html/seqinfo.hg19.html
db0173fc0ac5b81ceaa047bb22419203 *html/seqinfo.hg38.html
14665c92edc99205c5c01f72d2f99476 *html/seqinfo.mm10.html
9005eaeb868fe848b26b74f306f49757 *html/simplifySampleNames.html
3d40f7d0ea03a240dead812fa397d50d *html/summarizeBsSeqOver.html
13705fbf30100ce3e11a234a5ac4275c *html/unionize.html
39c1310b90fe5a0de192833a7df9f3d7 *scripts/clocks.R
73a881932be92dd2a1594cbef6303e4a *scripts/extdataDescription.md
62b582af8bfe316884406f04f44d7606 *scripts/genShuffledMCF7CunhaBed.py
