mold {biovizBase} | R Documentation

## mold data into data.frame

### Description

mold data into data.frame usued for visualization, so it's sometimes not as simple as coersion, for example, we add midpoint varialbe for mapping.

### Usage

    ## S4 method for signature 'IRanges'
    mold(data)
    ## S4 method for signature 'GRanges'
    mold(data)
    ## S4 method for signature 'GRangesList'
    mold(data,indName = "grl_name")
    ## S4 method for signature 'Seqinfo'
    mold(data)
    ## S4 method for signature 'matrix'
    mold(data)
    ## S4 method for signature 'eSet'
    mold(data)
    ## S4 method for signature 'ExpressionSet'
    mold(data)
    ## S4 method for signature 'RangedSummarizedExperiment'
    mold(data, assay.id = 1)
    ## S4 method for signature 'Views'
    mold(data)
    ## S4 method for signature 'Rle'
    mold(data)
    ## S4 method for signature 'RleList'
    mold(data)
    ## S4 method for signature 'VRanges'
    mold(data)

### Arguments

`data` | data to be mold into data.frame with additional column that helped mapping.For example we add 'midpoint' variable to a ranged converted data.frame.
`indName` | when collapsing a GRangesList, list names are aggregated into extra column named by this parameter.
`assay.id` | define the assay id you want to convert into a data.frame.

### Value

a data.frame object.

### Author(s)

Tengfei Yin

[Package biovizBase version 1.40.0 Index]