Mutation_obj {bioCancer} | R Documentation

## Atribute mutation frequency to nodes

### Description

Atribute mutation frequency to nodes

### Usage

    Mutation_obj(list,FreqMutThreshold, geneListLabel)

### Arguments

`list` | A list of data frame with mutation data. Each data frame to study
`FreqMutThreshold` | threshold Rate of cases (patients) having mutation (0-1).
`geneListLabel` | file name of geneList examples: "73"

### Value

A dat frame with mutation frequency. Ech column corresponds to a study.

### Examples

     cgds <- CGDS("http://www.cbioportal.org/")
     ## Not run:
     geneList <- whichGeneList("73")
     MutData <- getMutationData(cgds,"gbm_tcga_pub_all",
     "gbm_tcga_pub_mutations", geneList )
     listMutData <- list(ls1=MutData, ls2=MutData)
     FreqMutThreshold <- 10
     r_data <- new.env()
     MutObj <- Mutation_obj(listMutData, 10, "73")

    ## End(Not run)

[Package bioCancer version 1.20.02 Index]