soybean_ir_sub_metrics {bigPint} | R Documentation

## Raw and subsetted soybean leaves iron-metabolism metrics

### Description

This data contains metrics for raw RNA-sequencing read counts from a soybean dataset that compared leaves that were exposed to iron-rich (iron-postive) soil conditions versus leaves that were exposed to iron -poor (iron-negative) soil conditions. The data was collected 120 minutes after iron conditions were initiated. The metrics include the log fold change and the p-values for all genes and all pairwise combinations of treatment groups. To save on size, this example dataset was generated by obtaining a random subset of 1 out of 10 genes from the original resource.

### Usage

    data(soybean_ir_sub_metrics)

### Format

a `RData` instance, 1 list per treatment group combination and 1 row per gene

A nested list of length 1. The list contains the metrics for the 5,604 genes for the one treatment group combination.

### Details

Raw and subsetted soybean leaves iron-metabolism metrics

- ID gene name

- logFC log fold change

- PValue p-value

### References

Moran Lauter AN, Graham MA. NCBI SRA bioproject accession: PRJNA318409.

### See Also

`soybean_ir_sub` for information about the treatment groups

[Package bigPint version 1.8.0 Index]