readFromGTF {bambu} | R Documentation

## convert a GTF file into a GRangesList

### Description

Outputs GRangesList object from reading a GTF file

### Usage

    readFromGTF(file)

### Arguments

`file` | a .gtf file

### Value

grlist a `GRangesList` object, with two columns

- TXNAME specifying prefix for new gene Ids (genePrefix.number), defaults to empty

- GENEID indicating whether filter to remove read classes which are a subset of known transcripts(), defaults to TRUE

### Examples

    gtf.file <- system.file("extdata",
        "Homo_sapiens.GRCh38.91_chr9_1_1000000.gtf",
        package = "bambu"
    )
    readFromGTF(gtf.file)

[Package bambu version 1.2.1 Index]