prepareAnnotations {bambu} | R Documentation

## prepare annotations from txdb object or gtf file

### Description

Function to prepare tables and genomic ranges for transript reconstruction using a txdb object

### Usage

    prepareAnnotations(x)

### Arguments

`x` | A `TxDb` object or a gtf file

### Value

A `GRangesList` object

### Examples

    gtf.file <- system.file("extdata",
        "Homo_sapiens.GRCh38.91_chr9_1_1000000.gtf",
        package = "bambu"
    )
    prepareAnnotations(x = gtf.file)

[Package bambu version 1.2.1 Index]