writeToGTF {bambu} | R Documentation

## write GRangeslist into GTF file

### Description

Write annotation GRangesList into a GTF file

### Usage

    writeToGTF(annotation, file, geneIDs = NULL)

### Arguments

`annotation` | a `GRangesList` object
`file` | the output gtf file name
`geneIDs` | an optional dataframe of geneIDs (column 2) with the corresponding transcriptIDs (column 1)

### Value

gtf a GTF dataframe

### Examples

    outputGtfFile <- tempfile()
    gr <- readRDS(system.file("extdata",
        "annotationGranges_txdbGrch38_91_chr9_1_1000000.rds",
        package = "bambu"
    ))
    writeToGTF(gr, outputGtfFile)

[Package bambu version 1.2.1 Index]