writeBambuOutput {bambu} | R Documentation

## Write bambu results to GTF and transcript/gene-count files

### Description

Outputs a GTF file, transcript-count file, and gene-count file from bambu

### Usage

    writeBambuOutput(se, path, prefix = "")

### Arguments

`se` | a `SummarizedExperiment` object from `bambu`.
`path` | the destination of the output files (gtf, transcript counts, and gene counts)
`prefix` | the prefix of the output files

### Value

The function will generate three files, a .gtf file for the annotations, two .txt files for transcript and gene counts respectively.

### Examples

    se <- readRDS(system.file("extdata",
        "seOutput_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds",
        package = "bambu"
    ))
    path <- tempdir()
    writeBambuOutput(se, path)

[Package bambu version 1.2.1 Index]