diversities {animalcules} | R Documentation

## Get alpha diversity

### Description

Get alpha diversity

### Usage

    diversities(counts_table, index = "all", zeroes = TRUE)

### Arguments

`counts_table` | A dataframe with organism x sample
`index` | One of inverse_simpson,gini_simpson,shannon,fisher,coverage,unit
`zeroes` | A boolean for whether to ignore zero values

### Value

A list of alpha diversity

### Examples

    diversities(matrix(seq_len(12), nrow = 3),index="shannon")

[Package animalcules version 1.8.1 Index]