upsample_counts {animalcules} | R Documentation

## Upsample a counts table to a higher taxon level

### Description

Upsample a counts table to a higher taxon level

### Usage

    upsample_counts(counts_table, tax_table, higher_level)

### Arguments

`counts_table` | A organism x sample data frame of counts
`tax_table` | A organism x taxlev data frame of labels
`higher_level` | Higher taxon level to upsample to

### Value

A organism x sample data frame of counts

### Examples

    toy_data <- readRDS(system.file("extdata/toy_data.rds", package = "animalcules"))
    tax_table <- toy_data$tax_table
    sam_table <- toy_data$sam_table
    counts_table <- toy_data$counts_table
    counts_table <- upsample_counts(counts_table, tax_table, "phylum")

[Package animalcules version 1.8.1 Index]