Package: alpine
Title: alpine
Version: 1.18.0
Author: Michael Love, Rafael Irizarry
Maintainer: Michael Love <michaelisaiahlove@gmail.com>
Description: Fragment sequence bias modeling and correction for RNA-seq
        transcript abundance estimation.
License: GPL (>=2)
VignetteBuilder: knitr
Depends: R (>= 3.3)
Imports: Biostrings, IRanges, GenomicRanges, GenomicAlignments,
        Rsamtools, SummarizedExperiment, GenomicFeatures, speedglm,
        splines, graph, RBGL, stringr, stats, methods, graphics,
        GenomeInfoDb, S4Vectors
Suggests: knitr, testthat, alpineData, rtracklayer, ensembldb,
        BSgenome.Hsapiens.NCBI.GRCh38, RColorBrewer
biocViews: Sequencing, RNASeq, AlternativeSplicing,
        DifferentialSplicing, GeneExpression, Transcription, Coverage,
        BatchEffect, Normalization, Visualization, QualityControl
RoxygenNote: 5.0.1
git_url: https://git.bioconductor.org/packages/alpine
git_branch: RELEASE_3_13
git_last_commit: 06257d2
git_last_commit_date: 2021-05-19
Date/Publication: 2021-05-19
NeedsCompilation: no
Packaged: 2021-05-19 22:57:08 UTC; biocbuild
Built: R 4.1.0; ; 2021-05-20 07:03:57 UTC; windows
