plotAlevinKneeRaw {alevinQC} | R Documentation

## Knee plot of raw cell barcode frequencies

### Description

Plot the raw cell barcode frequencies in decreasing order, and indicate a predetermined breakpoint (indicating barcodes included in the original whitelist) using color as well as a label.

### Usage

    plotAlevinKneeRaw(cbTable)

### Arguments

`cbTable` | `data.frame` with raw barcode frequencies (such as the `cbTable` returned by `readAlevinQC`).

### Value

A ggplot object

### Author(s)

Charlotte Soneson

### Examples

    alevin <- readAlevinQC(system.file("extdata/alevin_example_v0.14",
                                       package = "alevinQC"))
    plotAlevinKneeRaw(alevin$cbTable)

[Package alevinQC version 1.8.0 Index]