.plotSamples {abseqR} | R Documentation

## Monolith AbSeq Plot function - the "driver" program

### Description

Monolith AbSeq Plot function - the "driver" program

### Usage

    .plotSamples(sampleNames, directories, analysis, outputDir, primer5Files,
      primer3Files, upstreamRanges, skipDgene = FALSE)

### Arguments

`sampleNames` | vector type. Vector of sample names in strings
`directories` | vector type. Vector of directories in strings, must be 1-1 with sampleNames
`analysis` | vector / list type. What analysis to plot for. If sampleNames or directories is > 1 (i.e. AbSeqCRep), then make sure that it's an intersection of all analysis conducted by the repertoires, otherwise, it wouldn't make sense
`outputDir` | string type. Where to dump the output
`primer5Files` | vector / list type. Collection of strings that the sample used for primer5 analysis. If sample N doesn't have a primer 5 file, leave it as anthing but a valid file path.
`primer3Files` | vector / list type. Collection of strings that the sample used for primer 3 analysis. If sample N doesn't have a primer 3 file, leave it as anthing but a valid file path.
`upstreamRanges` | list type. Collection of "None"s or vector denoting upstreamStart and upstreamEnd for each sample.
`skipDgene` | logical type. Whether or not to skip D gene distribution plot

### Value

none

[Package abseqR version 1.10.0 Index]