plotExchangeSpectra {YAPSA} | R Documentation

## Plot the spectra of nucleotide exchanges

### Description

Plots the spectra of nucleotide exchanges in their triplet contexts. If several columns are present in the input data frame, the spectra are plotted for every column separately.

### Usage

    plotExchangeSpectra(
      in_catalogue_df,
      in_colour_vector = NULL,
      in_show_triplets = FALSE,
      in_show_axis_title = FALSE,
      in_scales = "free_x",
      in_refLine = NULL,
      in_refAlpha = 0.5,
      in_background = NULL
    )

### Arguments

`in_catalogue_df` | Numerical data frame encoding the exchange spectra to be displayed, either a mutational catalogue `V` or a signatures matrix `W`.
`in_colour_vector` | Specifies the colours of the 6 nucleotide exchanges if non-null.
`in_show_triplets` | Whether or not to show the triplets on the x-axis
`in_show_axis_title` | Whether or not to show the name of the y-axis
`in_scales` | Argument passed on to `facet_grid`
`in_refLine` | If non-null, value on the y-axis at which a horizontal line is to be drawn
`in_refAlpha` | Transparency of the horizontal line if it is to be drawn
`in_background` | Option to provide a background theme, e.g. `theme_grey`

### Value

The generated barplot - a ggplot2 plot

### See Also

`geom_bar`

`facet_grid`

### Examples

     NULL

[Package YAPSA version 1.18.0 Index]