get_comigrations_by_name {XINA} | R Documentation

## get_comigrations_by_name

### Description

'get_comigrations_by_name' finds proteins comigrated with the given proteins

### Usage

    get_comigrations_by_name(clustering_result, selected_conditions,
      protein_list, cex = 0.7, alpha = 0.3)

### Arguments

`clustering_result` | A list containing XINA clustering results. See xina_clustering
`selected_conditions` | A vector of condition names used in XINA clustering results. The number of selected conditions should be at least two.
`protein_list` | A vector containing gene names.
`cex` | Size of cluster number on block axis. Default if 0.7. See alluvial
`alpha` | Transparency of alluvia colors. Default is 0.3. See alluvial

### Value

An alluvial plot displaying comigrations and the data frame containing comigrations of the input proteins

### Examples

    # load XINA example data
    data(xina_example)

    # the clustering result table
    all_proteins  <- as.character(example_clusters$aligned$`Gene name`)
    # get a vector of experimental conditions analyzed in the clustering results
    classes <- as.vector(example_clusters$condition)

    comigrated_prots_all <- get_comigrations_by_name(example_clusters, classes, all_proteins[1:3])

[Package XINA version 1.10.0 Index]