plotDomainogram {UMI4Cats} | R Documentation

## Plot domainogram

### Description

Plot domainogram

### Usage

    plotDomainogram(
      umi4c,
      dgram_function = "quotient",
      grouping = NULL,
      colors = NULL,
      xlim = NULL
    )

### Arguments

`umi4c` | UMI4C object as generated by `makeUMI4C`.
`dgram_function` | Function used for calculating the fold-change in the domainogram plot, either "difference" or "quotient". Default: "quotient".
`grouping` | Grouping used for the different samples. If none available or want to add new groupings, run `addGrouping`.
`colors` | Named vector of colors to use for plotting for each group.
`xlim` | Limits for the plot x axis (genomic coordinates).

### Value

Produces the domainogram plot, summarizing the merged number of UMIs at the different scales analyzed (y axis).

### Examples

    data("ex_ciita_umi4c")
    ex_ciita_umi4c <- addGrouping(ex_ciita_umi4c, grouping="condition")

    plotDomainogram(ex_ciita_umi4c, grouping = "condition")

[Package UMI4Cats version 1.2.1 Index]