combineUMI4C {UMI4Cats} | R Documentation

## Combine UMI4C fragments

### Description

Combine the UMI4C fragments that overlap a given set of `query_regions`.

### Usage

    combineUMI4C(umi4c, query_regions)

### Arguments

`umi4c` | UMI4C object as generated by `makeUMI4C` or the `UMI4C` constructor.
`query_regions` | `GRanges` object containing the coordinates of the genomic regions for combining restriction fragments.

### Value

`UMI4C` object with rowRanges corresponding to query_regions and assay containing the sum of raw UMI counts at each specified `query_region`.

### Examples

    data("ex_ciita_umi4c")

    wins <- makeWindowFragments(ex_ciita_umi4c)
    umi_comb <- combineUMI4C(ex_ciita_umi4c, wins)

[Package UMI4Cats version 1.2.1 Index]