addGrouping {UMI4Cats} | R Documentation

## Add grouping of UMI-4C samples

### Description

This function can be used to add specific groupings to `UMI4C` objects.

### Usage

    addGrouping(
      umi4c,
      grouping = "sampleID",
      scales = 5:150,
      normalized = TRUE,
      sd = 2
    )

### Arguments

`umi4c` | UMI4C object as generated by `makeUMI4C`.
`grouping` | Name of the column in colData used to merge the samples or replicates. Set to NULL for skipping grouping. Default: "condition".
`scales` | Numeric vector containing the scales for calculating the domainogram.
`normalized` | Logical indicating whether UMI-4C profiles should be normalized to the `ref_umi4c` sample/group. Default: TRUE
`sd` | Stantard deviation for adaptative trend.

### Value

Adds a new `UMI4C` object into the `groupsUMI4C` slot with samples grouped according to `grouping` variable.

### Examples

    data("ex_ciita_umi4c")

    ex_ciita_umi4c <- addGrouping(ex_ciita_umi4c, grouping="condition")

[Package UMI4Cats version 1.2.1 Index]