plotTrend {UMI4Cats} | R Documentation

## Plot adaptative smoothen trend

### Description

Plot adaptative smoothen trend

### Usage

    plotTrend(umi4c, grouping = NULL, colors = NULL, xlim = NULL, ylim = NULL)

### Arguments

`umi4c` | UMI4C object as generated by `makeUMI4C`.
`grouping` | Grouping used for the different samples. If none available or want to add new groupings, run `addGrouping`.
`colors` | Named vector of colors to use for plotting for each group.
`xlim` | Limits for the plot x axis (genomic coordinates).
`ylim` | Limits of the trend y axis.

### Value

Produces the adaptative trend plot, showing average UMIs at each position taking into account the minimum number of molecules used to merge restriction fragments.

### Examples

    data("ex_ciita_umi4c")

    plotTrend(ex_ciita_umi4c)

[Package UMI4Cats version 1.2.1 Index]