histogram-methods {TransView} | R Documentation

## Histogram of the read distribution

### Description

Retrieves the histogram computed by the `parseReads` function

### Usage

    ## S4 method for signature 'DensityContainer'
    histogram(dc)

### Arguments

`dc` | An object of class DensityContainer.

### Details

The histogram is computed by taking the running average within a window of window size as specified by the argument `hwindow` to the function `parseReads()`. The histogram is only counting local reads within the read density maps and outside of gaps or outside of possible range filters that might be in place.

### Value

Returns a numeric vector with the histogram in 1Bp resolution starting from 0.

### Author(s)

Julius Muller ju-mu@alumni.ethz.ch

[Package TransView version 1.36.0 Index]