plotTVData {TransView} | R Documentation

## Summarize plotTV results

### Description

plotTVData returns the ordering and clustering results as internally calculated by plotTV.

### Usage

    ## S4 method for signature 'TVResults'
    plotTVData(tvr)

### Arguments

`tvr` | A TVResults object as returned by plotTV

### Details

If k-means or manual clustering was performed, row means per cluster will be returned in a data.frame. Otherwise row means over the whole data will be returned.

### Value

Returns a `data.frame` of the clustering results with five columns: Position, Cluster, Sample, Average_scores and Plot

### Author(s)

Julius Muller ju-mu@alumni.ethz.ch

### See Also

- TVResults-class.

### Examples

    exbam<-dir(system.file("extdata", package="TransView"),full=TRUE,patt="bam$")
    exls<-dir(system.file("extdata", package="TransView"),full=TRUE,patt="xls$")

    exden.ctrl<-parseReads(exbam[1],verbose=0)
    exden.chip<-parseReads(exbam[2],verbose=0)

    peaks<-macs2gr(exls,psize=500)

    cluster_res<-plotTV(exden.chip,exden.ctrl,regions=peaks,cluster=5,norm_readc=FALSE,showPlot=FALSE)
    summaryTV(cluster_res)
    tvdata<-plotTVData(cluster_res)

[Package TransView version 1.36.0 Index]