dloadGmt {TimiRGeN} | R Documentation

## dloadGmt

### Description

Downloads the most up-to-date versions of the mouse or human wikipathway information databases. Output will be stored as three distinct dataframes within the input MAE 1) path_gene, 2) path_names, 3) path_data.

### Usage

    dloadGmt(MAE, species = "")

### Arguments

`MAE` | MultiAssayExperiment to store downloaded GMT data in. It might be useful to start a new MAE for dloadGmt using MultiAssayExperiment(). This is so the MAE objects used in this analysis do not get too large.
`species` | Full species names e.g. retrieve "Homo sapiens" or "Mus musculus" data.

### Value

3 dataframes. 1) path_gene, 2) path_names, 3) path_data. All of which will be stored as assays in the input MAE.

### Examples

    MAE <- MultiAssayExperiment()

    MAE <- dloadGmt(MAE, species = "Homo sapiens")

[Package TimiRGeN version 1.2.0 Index]