wikiList {TimiRGeN} | R Documentation

## wikiList

### Description

Provides a list of wikipathways specific for a species, and each gene found to be within each pathway. wikiList will download and process a large amount of data from the wikipathways website so this may take some time to complete.

### Usage

    wikiList(MAE, stringSpecies = '', stringSymbol = '')

### Arguments

`MAE` | MultiAssayExperiment which will store the results from wikiList. It is recommended to use the same MAE which stores output from the dloadGmt function.
`stringSpecies` | Full species name to decide which wikipathways to download. 'Homo sapiens' to download human pathways or 'Mus musculus' to download mouse pathways.
`stringSymbol` | Type of gene ID to retrieve e.g. 'En' for ensemble gene IDs or 'L' for entrezgene IDs.

### Value

List of wikipathways and associated genes saved as as strings. Output will be stored as metadata in the input MAE.

[Package TimiRGeN version 1.2.0 Index]