makeGRangesFromTSR {TSRchitect} | R Documentation

## makeGRangesFromTSR

### Description

`makeGRangesFromTSR` creates a GRanges object from a specified TSR data set

### Usage

    makeGRangesFromTSR(experimentName, tsrSetType, tsrSet = 1)

    ## S4 method for signature 'tssObject,character,numeric'
    makeGRangesFromTSR(experimentName, tsrSetType, tsrSet = 1)

### Arguments

`experimentName` | an S4 object of class tssObject containing information in slot @tssTagData
`tsrSetType` | specifies the set to be written to file. Options are "replicates" or "merged". (character)
`tsrSet` | number of the dataset to be processed (numeric).

### Value

An object of class GRanges containing the specified TSR data set. Headers include 'seqnames', 'ranges' (including start and end), 'strand', 'name' (TSR ID) and 'score' (Shape Index/SI) value

### Note

For more information on the GRanges class, please visit: http://web.mit.edu/~r/current/arch/i386_linux26/lib/R/library/GenomicRanges/html/GRanges-class.html

### Examples

    load(system.file("extdata", "tssObjectExample.RData", package="TSRchitect"))
    makeGRangesFromTSR(experimentName=tssObjectExample, tsrSetType="replicates",
    tsrSet=1)

[Package TSRchitect version 1.18.0 Index]