TSCANorder {TSCAN} | R Documentation

## TSCANorder

### Description

Construct TSCAN order after exprmclust

### Usage

    TSCANorder(mclustobj, MSTorder = NULL, orderonly = T, flip = F, listbranch = F)

### Arguments

`mclustobj` | The exact output of the `exprmclust` function.
`MSTorder` | A numeric vector specifying the order of clusters.
`orderonly` | Only return the ordering. State or pseudotime information will not be returned
`flip` | whether to flip the ordering
`listbranch` | whether to list the ordering results of all possible branches in MST. Only works if MSTorder in NULL.

### Details

This function takes the exact output of exprmclust function and construct TSCAN order by mapping all cells onto the path that connects cluster centers. Users can also specify their own path.

### Value

if orderonly = F, a vector of ordered cell names. if orderonly = T, a data frame of ordered cell names, cell states and pseudotime.

### Author(s)

Zhicheng Ji, Hongkai Ji <zji4@zji4.edu>

### Examples

    data(lpsdata)
    procdata <- preprocess(lpsdata)
    lpsmclust <- exprmclust(procdata)
    TSCANorder(lpsmclust)

[Package TSCAN version 1.30.0 Index]