plotmclust {TSCAN} | R Documentation

## plotmclust

### Description

Plot the model-based clustering results

### Usage

    plotmclust(
      mclustobj,
      x = 1,
      y = 2,
      MSTorder = NULL,
      show_tree = T,
      show_cell_names = T,
      cell_name_size = 3,
      markerexpr = NULL
    )

### Arguments

`mclustobj` | The exact output of `exprmclust` function.
`x` | The column of data after dimension reduction to be plotted on the horizontal axis.
`y` | The column of data after dimension reduction to be plotted on the vertical axis.
`MSTorder` | The arbitrary order of cluster to be shown on the plot.
`show_tree` | Whether to show the links between cells connected in the minimum spanning tree.
`show_cell_names` | Whether to draw the name of each cell in the plot.
`cell_name_size` | The size of cell name labels if show_cell_names is TRUE.
`markerexpr` | The gene expression used to define the size of nodes.

### Details

This function will plot the gene expression data after dimension reduction and show the clustering results.

### Value

A ggplot2 object.

### Author(s)

Zhicheng Ji, Hongkai Ji <zji4@zji4.edu>

### Examples

    data(lpsdata)
    procdata <- preprocess(lpsdata)
    lpsmclust <- exprmclust(procdata)
    plotmclust(lpsmclust)

[Package TSCAN version 1.30.0 Index]