tpp2dPlotQChist {TPP} | R Documentation

## Plot quality control histograms

### Description

Plots quality control histograms of pEC50 values of reference dataset and indicates the pEC50 values of the 2D-TPP experiment

### Usage

    tpp2dPlotQChist(
      configFile = NULL,
      resultTable = NULL,
      resultPath = NULL,
      trRef = NULL,
      fcStr = "rel_fc_",
      idVar = "gene_name",
      qualColName = "qupm"
    )

### Arguments

`configFile` | data frame or system path to table that specifies important details of the 2D-TPP experiment
`resultTable` | data.frame containing the results of a CCR analysis of 2D-TPP data
`resultPath` | character string containing a valid system path to which the the qc plots will be written
`trRef` | character string with a link to a TPP-TR reference object RData file
`fcStr` | character string indicating how columns that will contain the actual fold change values are called.
`idVar` | character string indicating name of the columns containing the unique protein identifiers
`qualColName` | character string indicating which column contain protein identification quality measures

### Value

A pdf with various quality control plots for a specified 2D-TPP data set

[Package TPP version 3.20.1 Index]