findHits {TPP2D} | R Documentation

## Find hits according to FDR threshold

### Description

Find hits according to FDR threshold

### Usage

    findHits(fdr_df, alpha)

### Arguments

`fdr_df` | data frame obtained from computeFdr
`alpha` | significance threshold, default is set to 0.1

### Value

data frame of significant hits at FDR <= alpha

### Examples

    data("simulated_cell_extract_df")
    temp_df <- simulated_cell_extract_df %>%
      filter(clustername %in% paste0("protein", 1:5)) %>%
      group_by(representative) %>%
      mutate(nObs = n()) %>%
      ungroup
    example_out <- fitAndEvalDataset(temp_df)
    example_null <- bootstrapNull(temp_df, B = 1)
    fdr_df <- getFDR(example_out, example_null)
    findHits(fdr_df, 0.1)

[Package TPP2D version 1.8.0 Index]